Gene annotation
Transcriptome id Sobic.004G195700.1
Synonym Sb04g024260
Functional annotation heavy metal associated domain containing protein, expressed
UniProt C5XWC5
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF34
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05030 : Copper transport protein family
RAP-DB (Rice) LOC_Os02g37300.1 : heavy metal associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011064 , Zm00025a021378
Brachypodium PNT68931
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G054300 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
2 Sobic.005G212600 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.005G054600 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
4 Sobic.008G108900 GRF zinc finger family protein, expressed -
5 Sobic.004G164650 - -
6 Sobic.002G062300 expressed protein -
7 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.001G271000 - -
9 Sobic.007G115000 - -
10 Sobic.006G132200 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
11 Sobic.009G113600 - -
12 Sobic.008G068400 - -
13 Sobic.009G004700 stripe rust resistance protein Yr10, putative, expressed -
14 Sobic.003G422000 "Glucan endo-1,3-beta-d-glucosidase"(PubMedID : 24906815)@"beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
15 Sobic.009G026400 - -
16 Sobic.002G051400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
17 Sobic.005G054000 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
18 Sobic.005G142200 expressed protein -
19 Sobic.008G009500 pentatricopeptide, putative, expressed -
20 Sobic.007G094600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450 protein, putative, expressed -


Gene co-expression network
sample Sobic004G195700 Sobic004G195700 Sobic005G054300 Sobic005G054300 Sobic004G195700--Sobic005G054300 Sobic005G212600 Sobic005G212600 Sobic004G195700--Sobic005G212600 Sobic005G054600 Sobic005G054600 Sobic004G195700--Sobic005G054600 Sobic008G108900 Sobic008G108900 Sobic004G195700--Sobic008G108900 Sobic004G164650 Sobic004G164650 Sobic004G195700--Sobic004G164650 Sobic002G062300 Sobic002G062300 Sobic004G195700--Sobic002G062300 Sobic005G012000 Sobic005G012000 Sobic004G195700--Sobic005G012000 Sobic001G271000 Sobic001G271000 Sobic004G195700--Sobic001G271000 Sobic007G115000 Sobic007G115000 Sobic004G195700--Sobic007G115000 Sobic005G054300--Sobic005G054600 Sobic005G054000 Sobic005G054000 Sobic005G054300--Sobic005G054000 Sobic009G026400 Sobic009G026400 Sobic005G054300--Sobic009G026400 Sobic009G101600 Sobic009G101600 Sobic005G054300--Sobic009G101600 Sobic005G142200 Sobic005G142200 Sobic005G054300--Sobic005G142200 Sobic005G054300--Sobic002G062300 Sobic005G054300--Sobic005G212600 Sobic001G305400 Sobic001G305400 Sobic005G054300--Sobic001G305400 Sobic002G221200 Sobic002G221200 Sobic005G054300--Sobic002G221200 Sobic005G212600--Sobic002G062300 Sobic001G253100 Sobic001G253100 Sobic005G212600--Sobic001G253100 Sobic009G113600 Sobic009G113600 Sobic005G212600--Sobic009G113600 Sobic006G132200 Sobic006G132200 Sobic005G212600--Sobic006G132200 Sobic005G212600--Sobic008G108900 Sobic008G091900 Sobic008G091900 Sobic005G212600--Sobic008G091900 Sobic005G212600--Sobic002G221200 Sobic008G009500 Sobic008G009500 Sobic005G212600--Sobic008G009500 SobicK024000 SobicK024000 Sobic005G212600--SobicK024000 Sobic005G054600--Sobic005G054300 Sobic005G054600--Sobic005G054000 Sobic005G054600--Sobic009G026400 Sobic005G054600--Sobic001G305400 Sobic005G054600--Sobic002G062300 Sobic005G054600--Sobic009G101600 Sobic005G054600--Sobic002G221200 Sobic005G054600--Sobic005G142200 Sobic002G060500 Sobic002G060500 Sobic005G054600--Sobic002G060500 Sobic008G108900--Sobic006G132200 Sobic009G196700 Sobic009G196700 Sobic008G108900--Sobic009G196700 Sobic008G108900--Sobic002G062300 Sobic008G108900--Sobic009G113600 Sobic007G059300 Sobic007G059300 Sobic008G108900--Sobic007G059300 Sobic008G108900--Sobic005G212600 Sobic003G176100 Sobic003G176100 Sobic008G108900--Sobic003G176100 Sobic002G051400 Sobic002G051400 Sobic008G108900--Sobic002G051400 Sobic003G031750 Sobic003G031750 Sobic008G108900--Sobic003G031750 Sobic004G164650--Sobic007G115000 Sobic002G285200 Sobic002G285200 Sobic004G164650--Sobic002G285200 Sobic004G164650--Sobic005G212600 Sobic004G076732 Sobic004G076732 Sobic004G164650--Sobic004G076732 Sobic004G164650--Sobic001G253100 Sobic004G164650--Sobic008G108900 Sobic004G164650--Sobic004G195700 Sobic004G164650--Sobic006G132200 Sobic003G424100 Sobic003G424100 Sobic004G164650--Sobic003G424100 Sobic002G062300--Sobic009G113600 Sobic002G062300--Sobic007G059300 Sobic002G062300--SobicK024000 Sobic002G062300--Sobic005G212600 Sobic002G062300--Sobic003G031750 Sobic002G062300--Sobic008G009500 Sobic002G062300--Sobic008G108900 Sobic002G062300--Sobic009G196700 Sobic002G062300--Sobic001G253100 Sobic003G044900 Sobic003G044900 Sobic005G012000--Sobic003G044900 Sobic002G039500 Sobic002G039500 Sobic005G012000--Sobic002G039500 Sobic006G184300 Sobic006G184300 Sobic005G012000--Sobic006G184300 Sobic007G023700 Sobic007G023700 Sobic005G012000--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic005G012000--Sobic003G093600 Sobic008G126200 Sobic008G126200 Sobic005G012000--Sobic008G126200 Sobic006G194150 Sobic006G194150 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic007G073400 Sobic007G073400 Sobic005G012000--Sobic007G073400 Sobic005G210300 Sobic005G210300 Sobic001G271000--Sobic005G210300 Sobic005G085100 Sobic005G085100 Sobic001G271000--Sobic005G085100 Sobic001G271000--Sobic009G101600 Sobic001G271000--Sobic005G054300 Sobic001G271000--Sobic005G142200 Sobic005G043400 Sobic005G043400 Sobic001G271000--Sobic005G043400 Sobic005G148400 Sobic005G148400 Sobic001G271000--Sobic005G148400 Sobic005G221550 Sobic005G221550 Sobic001G271000--Sobic005G221550 Sobic001G271000--Sobic002G060500 Sobic007G115000--Sobic005G212600 Sobic007G115000--Sobic002G285200 Sobic007G115000--Sobic001G253100 Sobic007G115000--Sobic008G091900 Sobic007G115000--Sobic006G132200 Sobic007G115000--Sobic002G062300 Sobic007G115000--Sobic004G164650 Sobic008G036500 Sobic008G036500 Sobic007G115000--Sobic008G036500 Sobic005G117801 Sobic005G117801 Sobic007G115000--Sobic005G117801
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.