Gene annotation
Transcriptome id Sobic.004G252300.1
Synonym COL1, ATCOL1
Functional annotation CCT/B-box zinc finger protein, putative, expressed
UniProt A0A1Z5RNZ1
Pfam PF06203
Panther DB PTHR31319 PTHR31319:SF18
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G15840 : B-box type zinc finger protein with CCT domain
RAP-DB (Rice) LOC_Os06g16370.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a050454 , Zm00025a021890
Brachypodium PNT69480
Barley -
Wheat TraesCS6A02G289400 , TraesCS6D02G269500 , TraesCS6B02G319500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G497400 - -
2 Sobic.009G077000 - -
3 Sobic.006G053550 - -
4 Sobic.002G214000 protein Kinase, putative, expressed -
5 Sobic.004G310350 - -
6 Sobic.009G215100 jacalin-like lectin domain containing protein, expressed -
7 Sobic.K031900 - -
8 Sobic.007G042700 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
9 Sobic.010G219200 - -
10 Sobic.005G123300 rhamnogalacturonate lyase, putative, expressed K18195: RGL4, rhamnogalacturonan endolyase
11 Sobic.005G019250 - -
12 Sobic.010G098800 NADH-ubiquinone oxidoreductase chain 6, putative, expressed K03884: NADH-ubiquinone oxidoreductase chain 6
13 Sobic.003G085533 - -
14 Sobic.005G045250 - -
15 Sobic.003G205000 DUF623 domain containing protein, expressed -
16 Sobic.002G000350 - -
17 Sobic.004G249950 - -
18 Sobic.001G202450 - -
19 Sobic.009G148400 - -
20 Sobic.002G112500 - -


Gene co-expression network
sample Sobic004G252300 Sobic004G252300 Sobic001G497400 Sobic001G497400 Sobic004G252300--Sobic001G497400 Sobic009G077000 Sobic009G077000 Sobic004G252300--Sobic009G077000 Sobic006G053550 Sobic006G053550 Sobic004G252300--Sobic006G053550 Sobic002G214000 Sobic002G214000 Sobic004G252300--Sobic002G214000 Sobic004G310350 Sobic004G310350 Sobic004G252300--Sobic004G310350 Sobic009G215100 Sobic009G215100 Sobic004G252300--Sobic009G215100 SobicK031900 SobicK031900 Sobic004G252300--SobicK031900 Sobic007G042700 Sobic007G042700 Sobic004G252300--Sobic007G042700 Sobic010G219200 Sobic010G219200 Sobic004G252300--Sobic010G219200 Sobic001G497400--Sobic004G252300 Sobic001G497400--Sobic007G042700 Sobic002G000350 Sobic002G000350 Sobic001G497400--Sobic002G000350 Sobic001G278900 Sobic001G278900 Sobic001G497400--Sobic001G278900 Sobic008G129500 Sobic008G129500 Sobic001G497400--Sobic008G129500 Sobic003G085533 Sobic003G085533 Sobic001G497400--Sobic003G085533 Sobic001G497400--Sobic004G310350 Sobic001G497400--Sobic009G077000 Sobic004G072300 Sobic004G072300 Sobic001G497400--Sobic004G072300 Sobic009G077000--Sobic002G214000 Sobic001G202450 Sobic001G202450 Sobic009G077000--Sobic001G202450 Sobic005G045250 Sobic005G045250 Sobic009G077000--Sobic005G045250 Sobic001G107550 Sobic001G107550 Sobic009G077000--Sobic001G107550 Sobic003G161900 Sobic003G161900 Sobic009G077000--Sobic003G161900 Sobic001G373850 Sobic001G373850 Sobic009G077000--Sobic001G373850 Sobic002G401533 Sobic002G401533 Sobic009G077000--Sobic002G401533 Sobic001G261444 Sobic001G261444 Sobic009G077000--Sobic001G261444 Sobic006G107700 Sobic006G107700 Sobic009G077000--Sobic006G107700 Sobic006G053550--Sobic009G215100 Sobic006G053550--Sobic004G310350 Sobic003G205000 Sobic003G205000 Sobic006G053550--Sobic003G205000 Sobic001G224500 Sobic001G224500 Sobic006G053550--Sobic001G224500 SobicK031400 SobicK031400 Sobic006G053550--SobicK031400 Sobic003G173200 Sobic003G173200 Sobic006G053550--Sobic003G173200 Sobic006G053550--SobicK031900 Sobic003G268100 Sobic003G268100 Sobic006G053550--Sobic003G268100 Sobic002G334700 Sobic002G334700 Sobic006G053550--Sobic002G334700 Sobic002G214000--Sobic001G373850 Sobic002G214000--Sobic009G077000 Sobic002G214000--Sobic001G202450 Sobic002G214000--Sobic004G310350 Sobic002G214000--SobicK031900 Sobic008G100201 Sobic008G100201 Sobic002G214000--Sobic008G100201 Sobic007G200700 Sobic007G200700 Sobic002G214000--Sobic007G200700 Sobic005G019250 Sobic005G019250 Sobic002G214000--Sobic005G019250 Sobic002G214000--Sobic010G219200 Sobic004G310350--Sobic006G053550 Sobic004G310350--Sobic005G019250 Sobic004G310350--Sobic002G214000 Sobic004G310350--Sobic001G224500 Sobic004G310350--SobicK031900 Sobic004G310350--Sobic008G129500 Sobic005G154600 Sobic005G154600 Sobic004G310350--Sobic005G154600 Sobic004G310350--Sobic009G215100 Sobic004G310350--Sobic003G268100 Sobic009G215100--Sobic006G053550 Sobic009G215100--Sobic003G173200 Sobic009G215100--Sobic003G205000 Sobic009G215100--SobicK031400 Sobic009G215100--Sobic003G268100 Sobic010G098800 Sobic010G098800 Sobic009G215100--Sobic010G098800 Sobic009G215100--Sobic001G224500 Sobic009G215100--SobicK031900 Sobic009G215100--Sobic004G310350 SobicK031900--Sobic008G100201 Sobic010G143700 Sobic010G143700 SobicK031900--Sobic010G143700 SobicK031900--Sobic003G268100 Sobic004G115100 Sobic004G115100 SobicK031900--Sobic004G115100 SobicK031900--Sobic007G200700 Sobic007G116150 Sobic007G116150 SobicK031900--Sobic007G116150 SobicK031900--SobicK031400 Sobic006G035350 Sobic006G035350 SobicK031900--Sobic006G035350 Sobic001G383350 Sobic001G383350 SobicK031900--Sobic001G383350 Sobic007G042700--Sobic001G497400 Sobic007G042700--Sobic002G000350 Sobic007G042700--Sobic001G278900 Sobic007G042700--Sobic003G085533 Sobic007G042700--Sobic004G252300 Sobic007G042700--Sobic004G072300 Sobic001G471050 Sobic001G471050 Sobic007G042700--Sobic001G471050 Sobic004G249950 Sobic004G249950 Sobic007G042700--Sobic004G249950 Sobic006G097600 Sobic006G097600 Sobic007G042700--Sobic006G097600 Sobic010G219200--Sobic003G085533 Sobic010G219200--Sobic004G072300 Sobic004G183701 Sobic004G183701 Sobic010G219200--Sobic004G183701 Sobic010G219200--Sobic007G116150 Sobic010G219200--Sobic008G100201 Sobic010G219200--SobicK031900 Sobic002G112500 Sobic002G112500 Sobic010G219200--Sobic002G112500 Sobic010G219200--Sobic010G143700 Sobic010G219200--Sobic001G383350
Octagon: transcription factors


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