Gene annotation
Transcriptome id Sobic.007G042700.1
Synonym P-glycoprotein, ABCB19, MDR1, ATMDR11, MDR11, ATABCB19, Sb07g003520, SbPGP20, PGP19, ATPGP19, ATMDR1
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA treatment" (PubMedID : 20528920)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1Z5R815
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF218
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G28860 : ATP binding cassette subfamily B19
RAP-DB (Rice) LOC_Os08g05710.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a030111 , Zm00025a030112 , Zm00025a030113 , Zm00025a030114
Brachypodium KQJ95403
Barley HORVU7Hr1G071870.8 , HORVU0Hr1G015570.1 , HORVU0Hr1G015570.2 , HORVU0Hr1G015570.3 , HORVU0Hr1G015570.4 , HORVU0Hr1G015570.5 , HORVU0Hr1G015570.6 , HORVU7Hr1G071870.4 , HORVU7Hr1G071870.5 , HORVU7Hr1G071870.6 , HORVU7Hr1G071870.7 , HORVU7Hr1G071870.1 , HORVU7Hr1G071870.2 , HORVU7Hr1G071870.3 , HORVU7Hr1G071870.9 , HORVU7Hr1G071870.29 , HORVU7Hr1G071870.26 , HORVU7Hr1G071870.25 , HORVU7Hr1G071870.24 , HORVU7Hr1G071870.23 , HORVU7Hr1G071870.21 , HORVU7Hr1G071870.20 , HORVU7Hr1G071870.38 , HORVU7Hr1G071870.34 , HORVU7Hr1G071870.35 , HORVU7Hr1G071870.36 , HORVU7Hr1G071870.37 , HORVU7Hr1G071870.31 , HORVU7Hr1G071870.32 , HORVU7Hr1G071870.33 , HORVU7Hr1G071870.16 , HORVU7Hr1G071870.17 , HORVU7Hr1G071870.14 , HORVU7Hr1G071870.15 , HORVU7Hr1G071870.13 , HORVU7Hr1G071870.10 , HORVU7Hr1G071870.11 , HORVU7Hr1G071870.18 , HORVU7Hr1G071870.28 , HORVU7Hr1G071870.27
Wheat TraesCS7D02G298400 , TraesCS6D02G131900 , TraesCS7B02G203400 , TraesCS6B02G170700 , TraesCS7A02G303200 , TraesCS7D02G298600 , TraesCS7A02G303100 , TraesCS7B02G203300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G497400 - -
2 Sobic.002G000350 - -
3 Sobic.001G278900 - -
4 Sobic.003G085533 - -
5 Sobic.004G252300 CCT/B-box zinc finger protein, putative, expressed -
6 Sobic.004G072300 - -
7 Sobic.001G471050 - -
8 Sobic.004G249950 - -
9 Sobic.006G097600 - -
10 Sobic.010G219200 - -
11 Sobic.006G235801 - -
12 Sobic.008G129500 - -
13 Sobic.002G112500 - -
14 Sobic.009G247200 - -
15 Sobic.001G081450 - -
16 Sobic.009G148400 - -
17 Sobic.009G213150 - -
18 Sobic.003G368550 - -
19 Sobic.009G077000 - -
20 Sobic.005G018400 NB-ARC domain containing protein, expressed -


Gene co-expression network
sample Sobic007G042700 Sobic007G042700 Sobic001G497400 Sobic001G497400 Sobic007G042700--Sobic001G497400 Sobic002G000350 Sobic002G000350 Sobic007G042700--Sobic002G000350 Sobic001G278900 Sobic001G278900 Sobic007G042700--Sobic001G278900 Sobic003G085533 Sobic003G085533 Sobic007G042700--Sobic003G085533 Sobic004G252300 Sobic004G252300 Sobic007G042700--Sobic004G252300 Sobic004G072300 Sobic004G072300 Sobic007G042700--Sobic004G072300 Sobic001G471050 Sobic001G471050 Sobic007G042700--Sobic001G471050 Sobic004G249950 Sobic004G249950 Sobic007G042700--Sobic004G249950 Sobic006G097600 Sobic006G097600 Sobic007G042700--Sobic006G097600 Sobic001G497400--Sobic004G252300 Sobic001G497400--Sobic007G042700 Sobic001G497400--Sobic002G000350 Sobic001G497400--Sobic001G278900 Sobic008G129500 Sobic008G129500 Sobic001G497400--Sobic008G129500 Sobic001G497400--Sobic003G085533 Sobic004G310350 Sobic004G310350 Sobic001G497400--Sobic004G310350 Sobic009G077000 Sobic009G077000 Sobic001G497400--Sobic009G077000 Sobic001G497400--Sobic004G072300 Sobic002G000350--Sobic004G072300 Sobic002G112500 Sobic002G112500 Sobic002G000350--Sobic002G112500 Sobic002G000350--Sobic003G085533 Sobic002G000350--Sobic008G129500 Sobic002G000350--Sobic001G471050 Sobic002G000350--Sobic007G042700 Sobic002G000350--Sobic001G497400 Sobic010G219200 Sobic010G219200 Sobic002G000350--Sobic010G219200 Sobic001G081450 Sobic001G081450 Sobic002G000350--Sobic001G081450 Sobic001G278900--Sobic001G497400 Sobic001G278900--Sobic007G042700 Sobic001G278900--Sobic001G471050 Sobic001G278900--Sobic002G000350 Sobic001G278900--Sobic002G112500 Sobic001G278900--Sobic009G077000 Sobic001G278900--Sobic004G072300 Sobic002G358450 Sobic002G358450 Sobic001G278900--Sobic002G358450 Sobic001G278900--Sobic003G085533 Sobic003G085533--Sobic004G072300 Sobic003G085533--Sobic010G219200 Sobic003G085533--Sobic002G000350 Sobic003G085533--Sobic008G129500 Sobic003G085533--Sobic004G310350 Sobic002G200400 Sobic002G200400 Sobic003G085533--Sobic002G200400 Sobic003G085533--Sobic001G497400 Sobic004G183701 Sobic004G183701 Sobic003G085533--Sobic004G183701 Sobic009G247200 Sobic009G247200 Sobic003G085533--Sobic009G247200 Sobic004G252300--Sobic001G497400 Sobic004G252300--Sobic009G077000 Sobic006G053550 Sobic006G053550 Sobic004G252300--Sobic006G053550 Sobic002G214000 Sobic002G214000 Sobic004G252300--Sobic002G214000 Sobic004G252300--Sobic004G310350 Sobic009G215100 Sobic009G215100 Sobic004G252300--Sobic009G215100 SobicK031900 SobicK031900 Sobic004G252300--SobicK031900 Sobic004G252300--Sobic007G042700 Sobic004G252300--Sobic010G219200 Sobic004G072300--Sobic003G085533 Sobic004G072300--Sobic002G000350 Sobic004G072300--Sobic010G219200 Sobic004G072300--Sobic008G129500 Sobic004G072300--Sobic002G112500 Sobic004G072300--Sobic002G200400 Sobic002G134800 Sobic002G134800 Sobic004G072300--Sobic002G134800 Sobic004G072300--Sobic004G183701 Sobic001G373850 Sobic001G373850 Sobic004G072300--Sobic001G373850 Sobic001G471050--Sobic002G112500 Sobic009G145200 Sobic009G145200 Sobic001G471050--Sobic009G145200 Sobic001G471050--Sobic002G000350 Sobic007G098050 Sobic007G098050 Sobic001G471050--Sobic007G098050 Sobic007G226900 Sobic007G226900 Sobic001G471050--Sobic007G226900 Sobic001G383350 Sobic001G383350 Sobic001G471050--Sobic001G383350 Sobic001G471050--Sobic001G278900 Sobic007G183200 Sobic007G183200 Sobic001G471050--Sobic007G183200 Sobic001G471050--Sobic004G072300 Sobic009G148400 Sobic009G148400 Sobic004G249950--Sobic009G148400 Sobic010G098800 Sobic010G098800 Sobic004G249950--Sobic010G098800 Sobic004G249950--Sobic001G081450 Sobic004G223700 Sobic004G223700 Sobic004G249950--Sobic004G223700 Sobic004G206000 Sobic004G206000 Sobic004G249950--Sobic004G206000 Sobic007G045750 Sobic007G045750 Sobic004G249950--Sobic007G045750 Sobic002G073000 Sobic002G073000 Sobic004G249950--Sobic002G073000 Sobic004G249950--Sobic010G219200 Sobic009G158150 Sobic009G158150 Sobic004G249950--Sobic009G158150 Sobic006G097600--Sobic001G471050 Sobic006G097600--Sobic007G042700 Sobic003G129700 Sobic003G129700 Sobic006G097600--Sobic003G129700 Sobic006G097600--Sobic009G145200 Sobic005G018400 Sobic005G018400 Sobic006G097600--Sobic005G018400 Sobic006G053601 Sobic006G053601 Sobic006G097600--Sobic006G053601 Sobic002G178900 Sobic002G178900 Sobic006G097600--Sobic002G178900 Sobic009G170050 Sobic009G170050 Sobic006G097600--Sobic009G170050 Sobic006G097600--Sobic007G226900
Octagon: transcription factors


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