Gene annotation
Transcriptome id Sobic.004G303500.2
Synonym
Functional annotation DNA-directed RNA polymerase subunit beta, putative, expressed
UniProt A0A1Z5RQU2
Pfam PF00562
Panther DB PTHR20856 PTHR20856:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR ATCG00190 : RNA polymerase subunit beta
RAP-DB (Rice) LOC_Os04g16820.1 : DNA-directed RNA polymerase subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a057939
Brachypodium PNT61584
Barley HORVU2Hr1G121970.2 , HORVU6Hr1G049130.2 , HORVU0Hr1G036760.1 , HORVU0Hr1G028570.1 , HORVU0Hr1G033870.1 , AGP50745 , HORVU0Hr1G034190.1 , HORVU2Hr1G121960.2
Wheat -
Populus PNT08296


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G172800 ribulose bisphosphate carboxylase large chain precursor, putative, expressed K01601: ribulose-bisphosphate carboxylase large chain
2 Sobic.001G261444 - -
3 Sobic.004G126050 - -
4 Sobic.003G161900 - -
5 Sobic.K032200 ATP synthase protein MI25, putative, expressed -
6 Sobic.007G183200 down-regulated TF in developmental senescence(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed K18486: heart-and neural crest derivatives-expressed protein 2
7 Sobic.010G201332 - -
8 Sobic.004G115100 DNA-directed RNA polymerase subunit beta, putative, expressed K03043: DNA-directed RNA polymerase subunit beta
9 Sobic.001G383350 - -
10 Sobic.003G172300 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein
11 Sobic.007G200700 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
12 Sobic.001G475950 - -
13 Sobic.006G029850 - -
14 Sobic.003G208200 - -
15 Sobic.003G172966 - K05582: NAD(P)H-quinone oxidoreductase subunit K
16 Sobic.002G358450 - -
17 Sobic.003G056200 - -
18 Sobic.002G401533 - -
19 Sobic.005G065800 - -
20 Sobic.008G100201 - -


Gene co-expression network
sample Sobic004G303500 Sobic004G303500 Sobic003G172800 Sobic003G172800 Sobic004G303500--Sobic003G172800 Sobic001G261444 Sobic001G261444 Sobic004G303500--Sobic001G261444 Sobic004G126050 Sobic004G126050 Sobic004G303500--Sobic004G126050 Sobic003G161900 Sobic003G161900 Sobic004G303500--Sobic003G161900 SobicK032200 SobicK032200 Sobic004G303500--SobicK032200 Sobic007G183200 Sobic007G183200 Sobic004G303500--Sobic007G183200 Sobic010G201332 Sobic010G201332 Sobic004G303500--Sobic010G201332 Sobic004G115100 Sobic004G115100 Sobic004G303500--Sobic004G115100 Sobic001G383350 Sobic001G383350 Sobic004G303500--Sobic001G383350 Sobic010G039150 Sobic010G039150 Sobic003G172800--Sobic010G039150 Sobic001G506200 Sobic001G506200 Sobic003G172800--Sobic001G506200 Sobic003G053100 Sobic003G053100 Sobic003G172800--Sobic003G053100 Sobic006G029850 Sobic006G029850 Sobic003G172800--Sobic006G029850 Sobic005G139900 Sobic005G139900 Sobic003G172800--Sobic005G139900 Sobic003G172800--Sobic001G261444 Sobic004G303433 Sobic004G303433 Sobic003G172800--Sobic004G303433 Sobic003G172800--Sobic010G201332 Sobic003G172800--Sobic001G383350 Sobic001G261444--SobicK032200 Sobic007G200700 Sobic007G200700 Sobic001G261444--Sobic007G200700 Sobic001G261444--Sobic001G383350 Sobic001G261444--Sobic004G115100 Sobic001G475950 Sobic001G475950 Sobic001G261444--Sobic001G475950 Sobic001G261444--Sobic003G161900 Sobic001G261444--Sobic006G029850 Sobic001G261444--Sobic010G201332 Sobic008G100201 Sobic008G100201 Sobic001G261444--Sobic008G100201 Sobic003G172966 Sobic003G172966 Sobic004G126050--Sobic003G172966 Sobic004G126050--SobicK032200 Sobic004G126050--Sobic001G475950 Sobic003G056200 Sobic003G056200 Sobic004G126050--Sobic003G056200 Sobic004G126050--Sobic010G201332 Sobic005G065800 Sobic005G065800 Sobic004G126050--Sobic005G065800 Sobic002G358450 Sobic002G358450 Sobic004G126050--Sobic002G358450 Sobic004G126050--Sobic001G261444 Sobic006G107700 Sobic006G107700 Sobic004G126050--Sobic006G107700 Sobic002G401533 Sobic002G401533 Sobic003G161900--Sobic002G401533 Sobic003G161900--Sobic001G261444 Sobic003G161900--Sobic006G107700 Sobic005G104900 Sobic005G104900 Sobic003G161900--Sobic005G104900 Sobic003G208200 Sobic003G208200 Sobic003G161900--Sobic003G208200 Sobic009G077000 Sobic009G077000 Sobic003G161900--Sobic009G077000 Sobic003G161900--Sobic001G475950 Sobic003G161900--Sobic003G056200 Sobic003G161900--SobicK032200 SobicK032200--Sobic001G475950 SobicK032200--Sobic001G261444 SobicK032200--Sobic010G201332 SobicK032200--Sobic003G172966 SobicK032200--Sobic004G126050 SobicK032200--Sobic003G056200 SobicK032200--Sobic001G383350 SobicK032200--Sobic001G506200 SobicK032200--Sobic006G029850 Sobic007G183200--Sobic002G358450 Sobic007G183200--Sobic010G201332 Sobic007G183200--Sobic001G261444 Sobic007G183200--Sobic003G161900 Sobic007G183200--Sobic005G065800 Sobic007G183200--SobicK032200 Sobic007G183200--Sobic001G475950 Sobic009G143750 Sobic009G143750 Sobic007G183200--Sobic009G143750 Sobic007G183200--Sobic001G383350 Sobic010G201332--SobicK032200 Sobic010G201332--Sobic005G065800 Sobic010G201332--Sobic002G358450 Sobic010G201332--Sobic001G475950 Sobic010G201332--Sobic001G506200 Sobic010G201332--Sobic001G261444 Sobic010G201332--Sobic001G383350 Sobic010G201332--Sobic007G183200 Sobic010G201332--Sobic004G126050 Sobic004G115100--Sobic008G100201 Sobic004G115100--Sobic007G200700 Sobic004G115100--Sobic001G383350 Sobic004G115100--Sobic006G029850 Sobic004G115100--Sobic001G261444 SobicK031900 SobicK031900 Sobic004G115100--SobicK031900 Sobic006G035350 Sobic006G035350 Sobic004G115100--Sobic006G035350 Sobic010G143700 Sobic010G143700 Sobic004G115100--Sobic010G143700 Sobic006G107766 Sobic006G107766 Sobic004G115100--Sobic006G107766 Sobic001G383350--Sobic006G029850 Sobic001G383350--Sobic007G200700 Sobic001G383350--Sobic004G115100 Sobic001G383350--Sobic001G261444 SobicK032400 SobicK032400 Sobic001G383350--SobicK032400 Sobic001G383350--SobicK032200 SobicK032600 SobicK032600 Sobic001G383350--SobicK032600 Sobic001G383350--Sobic008G100201 Sobic002G112500 Sobic002G112500 Sobic001G383350--Sobic002G112500
Octagon: transcription factors


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