Gene annotation
Transcriptome id Sobic.004G306700.1,Sobic.004G306700.2
Synonym Sb04g033940, CYP40, SQN
Functional annotation peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
UniProt C5XSS4 , A0A1Z5RPU1
Pfam PF13414 PF00160
Panther DB PTHR11071 PTHR11071:SF259
NCBI CDD KOG0546; HSP90 co-chaperone CPR7/Cyclophilin
KEGG Orthology K05864; PPID, peptidyl-prolyl isomerase D
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT2G15790 : peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
RAP-DB (Rice) LOC_Os02g52360.1 : peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
MaizeGDB (Corn) Zm00025a042527 , Zm00025a035172
Brachypodium PNT69584 , KQJ92979 , KQK18992 , KQK18991 , KQK01783 , KQK01784
Barley HORVU6Hr1G077290.17 , HORVU6Hr1G077290.16 , HORVU6Hr1G077290.14 , HORVU6Hr1G077290.13 , HORVU6Hr1G077290.12 , HORVU6Hr1G077290.11 , HORVU6Hr1G077290.19 , HORVU6Hr1G077290.18 , HORVU6Hr1G077290.9 , HORVU6Hr1G077290.8 , HORVU6Hr1G077290.7 , HORVU6Hr1G077290.4 , HORVU6Hr1G077290.3 , HORVU6Hr1G077290.2 , HORVU6Hr1G077290.1 , HORVU6Hr1G012570.4 , HORVU6Hr1G012570.2 , HORVU6Hr1G012570.1 , HORVU7Hr1G036160.3 , HORVU7Hr1G036160.2 , HORVU7Hr1G036160.1 , HORVU7Hr1G036160.7 , HORVU7Hr1G036160.6 , HORVU7Hr1G036160.5 , HORVU7Hr1G036160.4 , HORVU7Hr1G036160.9 , HORVU7Hr1G036160.8 , HORVU7Hr1G036160.10 , HORVU6Hr1G092950.1
Wheat TraesCS7B02G080700 , TraesCS7D02G176900 , TraesCS7A02G175300 , TraesCS6D02G293100 , TraesCS6A02G313700 , TraesCS6B02G343800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G507700 - -
2 Sobic.001G316500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.001G312801 - -
4 Sobic.009G252600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial chaperone BCS1, putative, expressed K08900: mitochondrial chaperone BCS1
5 Sobic.001G027400 - -
6 Sobic.002G387000 expressed protein -
7 Sobic.010G217001 - -
8 Sobic.008G007100 lectin-like receptor kinase 7, putative, expressed -
9 Sobic.007G124800 MLA1, putative, expressed -
10 Sobic.003G304900 - -
11 Sobic.001G424066 - -
12 Sobic.003G301950 - -
13 Sobic.002G197400 expressed protein -
14 Sobic.006G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB4, putative, expressed -
15 Sobic.003G030200 phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
16 Sobic.008G007200 lectin-like receptor kinase, putative, expressed -
17 Sobic.001G174300 GRAS family transcription factor containing protein, expressed -
18 Sobic.001G490600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed -
19 Sobic.004G091300 receptor-like protein kinase precursor, putative, expressed -
20 Sobic.004G288900 protein kinase, putative, expressed -


Gene co-expression network
sample Sobic004G306700 Sobic004G306700 Sobic001G507700 Sobic001G507700 Sobic004G306700--Sobic001G507700 Sobic001G316500 Sobic001G316500 Sobic004G306700--Sobic001G316500 Sobic001G312801 Sobic001G312801 Sobic004G306700--Sobic001G312801 Sobic009G252600 Sobic009G252600 Sobic004G306700--Sobic009G252600 Sobic001G027400 Sobic001G027400 Sobic004G306700--Sobic001G027400 Sobic002G387000 Sobic002G387000 Sobic004G306700--Sobic002G387000 Sobic010G217001 Sobic010G217001 Sobic004G306700--Sobic010G217001 Sobic008G007100 Sobic008G007100 Sobic004G306700--Sobic008G007100 Sobic007G124800 Sobic007G124800 Sobic004G306700--Sobic007G124800 Sobic001G507700--Sobic004G306700 Sobic006G082100 Sobic006G082100 Sobic001G507700--Sobic006G082100 Sobic001G507700--Sobic002G387000 Sobic001G212800 Sobic001G212800 Sobic001G507700--Sobic001G212800 Sobic009G064832 Sobic009G064832 Sobic001G507700--Sobic009G064832 Sobic009G211600 Sobic009G211600 Sobic001G507700--Sobic009G211600 Sobic007G189900 Sobic007G189900 Sobic001G507700--Sobic007G189900 Sobic010G105900 Sobic010G105900 Sobic001G507700--Sobic010G105900 Sobic001G096200 Sobic001G096200 Sobic001G507700--Sobic001G096200 Sobic001G316500--Sobic007G124800 Sobic003G304900 Sobic003G304900 Sobic001G316500--Sobic003G304900 Sobic001G316500--Sobic010G217001 Sobic001G316500--Sobic004G306700 Sobic001G174300 Sobic001G174300 Sobic001G316500--Sobic001G174300 Sobic008G007200 Sobic008G007200 Sobic001G316500--Sobic008G007200 Sobic010G059900 Sobic010G059900 Sobic001G316500--Sobic010G059900 Sobic002G202200 Sobic002G202200 Sobic001G316500--Sobic002G202200 Sobic001G316500--Sobic001G027400 Sobic004G288900 Sobic004G288900 Sobic001G312801--Sobic004G288900 Sobic001G490600 Sobic001G490600 Sobic001G312801--Sobic001G490600 Sobic001G368000 Sobic001G368000 Sobic001G312801--Sobic001G368000 Sobic009G184500 Sobic009G184500 Sobic001G312801--Sobic009G184500 Sobic004G190800 Sobic004G190800 Sobic001G312801--Sobic004G190800 Sobic007G017300 Sobic007G017300 Sobic001G312801--Sobic007G017300 Sobic009G170301 Sobic009G170301 Sobic001G312801--Sobic009G170301 Sobic008G096300 Sobic008G096300 Sobic001G312801--Sobic008G096300 Sobic002G138200 Sobic002G138200 Sobic001G312801--Sobic002G138200 Sobic003G251900 Sobic003G251900 Sobic009G252600--Sobic003G251900 Sobic003G155800 Sobic003G155800 Sobic009G252600--Sobic003G155800 Sobic001G093732 Sobic001G093732 Sobic009G252600--Sobic001G093732 Sobic002G206900 Sobic002G206900 Sobic009G252600--Sobic002G206900 Sobic001G520000 Sobic001G520000 Sobic009G252600--Sobic001G520000 Sobic001G483001 Sobic001G483001 Sobic009G252600--Sobic001G483001 Sobic003G253700 Sobic003G253700 Sobic009G252600--Sobic003G253700 Sobic010G261500 Sobic010G261500 Sobic009G252600--Sobic010G261500 Sobic006G157450 Sobic006G157450 Sobic009G252600--Sobic006G157450 Sobic010G097800 Sobic010G097800 Sobic001G027400--Sobic010G097800 Sobic001G027400--Sobic003G304900 Sobic001G027400--Sobic008G007100 Sobic001G027400--Sobic001G174300 Sobic009G242032 Sobic009G242032 Sobic001G027400--Sobic009G242032 Sobic007G157200 Sobic007G157200 Sobic001G027400--Sobic007G157200 Sobic005G230700 Sobic005G230700 Sobic001G027400--Sobic005G230700 Sobic001G027400--Sobic007G124800 Sobic003G005332 Sobic003G005332 Sobic001G027400--Sobic003G005332 Sobic002G387000--Sobic007G189900 Sobic002G387000--Sobic001G312801 Sobic010G118401 Sobic010G118401 Sobic002G387000--Sobic010G118401 Sobic009G112500 Sobic009G112500 Sobic002G387000--Sobic009G112500 Sobic003G301950 Sobic003G301950 Sobic002G387000--Sobic003G301950 Sobic002G387000--Sobic001G490600 Sobic009G181900 Sobic009G181900 Sobic002G387000--Sobic009G181900 Sobic002G387000--Sobic001G507700 Sobic009G147600 Sobic009G147600 Sobic002G387000--Sobic009G147600 Sobic002G018133 Sobic002G018133 Sobic010G217001--Sobic002G018133 Sobic007G081400 Sobic007G081400 Sobic010G217001--Sobic007G081400 Sobic002G231400 Sobic002G231400 Sobic010G217001--Sobic002G231400 Sobic002G030001 Sobic002G030001 Sobic010G217001--Sobic002G030001 Sobic005G083866 Sobic005G083866 Sobic010G217001--Sobic005G083866 Sobic010G217001--Sobic004G288900 Sobic003G043650 Sobic003G043650 Sobic010G217001--Sobic003G043650 Sobic010G217001--Sobic002G138200 Sobic010G217001--Sobic001G316500 Sobic008G007100--Sobic008G007200 Sobic006G111400 Sobic006G111400 Sobic008G007100--Sobic006G111400 Sobic008G007100--Sobic003G005332 Sobic008G007100--Sobic001G027400 Sobic008G007100--Sobic003G304900 Sobic009G199900 Sobic009G199900 Sobic008G007100--Sobic009G199900 Sobic003G259000 Sobic003G259000 Sobic008G007100--Sobic003G259000 Sobic008G007100--Sobic003G251900 Sobic006G169600 Sobic006G169600 Sobic008G007100--Sobic006G169600 Sobic007G124800--Sobic001G174300 Sobic007G124800--Sobic001G316500 Sobic008G108000 Sobic008G108000 Sobic007G124800--Sobic008G108000 Sobic007G124800--Sobic010G217001 Sobic004G045700 Sobic004G045700 Sobic007G124800--Sobic004G045700 Sobic008G086300 Sobic008G086300 Sobic007G124800--Sobic008G086300 Sobic007G124800--Sobic001G027400 Sobic007G124800--Sobic008G007200 Sobic007G124800--Sobic002G202200
Octagon: transcription factors


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