Gene annotation
Transcriptome id Sobic.005G103800.1
Synonym Sb05g009370
Functional annotation miro, putative, expressed
UniProt A0A1B6PRF8
Pfam PF09439
Panther DB PTHR11711 PTHR11711:SF195
NCBI CDD KOG0077; Vesicle coat complex COPII, GTPase subunit SAR1
KEGG Orthology K07953; GTP-binding protein SAR1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62560 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os01g15010.1 : miro, putative, expressed
MaizeGDB (Corn) Zm00025a036193 , Zm00025a023946 , Zm00025a024454 , Zm00025a029629
Brachypodium KQK03638 , KQJ86341 , KQK04230 , KQK04231
Barley HORVU5Hr1G023140.1 , HORVU5Hr1G023140.3 , HORVU5Hr1G023140.2 , HORVU7Hr1G080190.5 , HORVU7Hr1G080190.4 , HORVU7Hr1G080190.3 , HORVU7Hr1G080190.2 , HORVU7Hr1G080190.1 , HORVU3Hr1G045150.4 , HORVU3Hr1G045150.5 , HORVU3Hr1G045150.1 , HORVU3Hr1G045150.3
Wheat TraesCS7D02G332100 , TraesCS5B02G095200 , TraesCS7B02G236300 , TraesCS5A02G089200 , TraesCS5D02G101300 , TraesCS3B02G221700 , TraesCS3D02G196200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
2 Sobic.005G011200 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.001G348700 - -
4 Sobic.001G333400 SCP-like extracellular protein, expressed -
5 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
6 Sobic.010G259500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
7 Sobic.001G365100 lipase, putative, expressed -
8 Sobic.002G290500 armadillo/beta-catenin repeat protein-related, putative, expressed -
9 Sobic.004G071650 - -
10 Sobic.003G252800 hypothetical protein -
11 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
12 Sobic.010G084100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
13 Sobic.002G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G354100 transporter family protein, putative, expressed -
15 Sobic.007G039600 aquaporin protein, putative, expressed K09874: aquaporin NIP
16 Sobic.002G184200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
17 Sobic.009G234100 WRKY49, expressed -
18 Sobic.003G076100 limonoid UDP-glucosyltransferase, putative, expressed -
19 Sobic.001G400800 pathogenesis-related Bet v I family protein, putative, expressed -
20 Sobic.003G307801 - -


Gene co-expression network
sample Sobic005G103800 Sobic005G103800 Sobic007G067400 Sobic007G067400 Sobic005G103800--Sobic007G067400 Sobic005G011200 Sobic005G011200 Sobic005G103800--Sobic005G011200 Sobic001G348700 Sobic001G348700 Sobic005G103800--Sobic001G348700 Sobic001G333400 Sobic001G333400 Sobic005G103800--Sobic001G333400 Sobic004G221500 Sobic004G221500 Sobic005G103800--Sobic004G221500 Sobic010G259500 Sobic010G259500 Sobic005G103800--Sobic010G259500 Sobic001G365100 Sobic001G365100 Sobic005G103800--Sobic001G365100 Sobic002G290500 Sobic002G290500 Sobic005G103800--Sobic002G290500 Sobic004G071650 Sobic004G071650 Sobic005G103800--Sobic004G071650 Sobic002G184200 Sobic002G184200 Sobic007G067400--Sobic002G184200 Sobic010G084100 Sobic010G084100 Sobic007G067400--Sobic010G084100 Sobic007G067400--Sobic004G221500 Sobic010G084300 Sobic010G084300 Sobic007G067400--Sobic010G084300 Sobic006G084600 Sobic006G084600 Sobic007G067400--Sobic006G084600 Sobic005G045900 Sobic005G045900 Sobic007G067400--Sobic005G045900 Sobic008G140300 Sobic008G140300 Sobic007G067400--Sobic008G140300 Sobic007G067400--Sobic001G348700 Sobic007G155100 Sobic007G155100 Sobic007G067400--Sobic007G155100 Sobic005G011200--Sobic001G333400 Sobic005G051500 Sobic005G051500 Sobic005G011200--Sobic005G051500 Sobic001G187200 Sobic001G187200 Sobic005G011200--Sobic001G187200 Sobic006G268800 Sobic006G268800 Sobic005G011200--Sobic006G268800 Sobic002G004900 Sobic002G004900 Sobic005G011200--Sobic002G004900 Sobic010G052700 Sobic010G052700 Sobic005G011200--Sobic010G052700 Sobic001G400800 Sobic001G400800 Sobic005G011200--Sobic001G400800 Sobic003G252800 Sobic003G252800 Sobic005G011200--Sobic003G252800 Sobic002G336700 Sobic002G336700 Sobic005G011200--Sobic002G336700 Sobic001G348700--Sobic003G252800 Sobic001G348700--Sobic004G221500 Sobic010G084700 Sobic010G084700 Sobic001G348700--Sobic010G084700 Sobic001G348700--Sobic006G084600 Sobic010G117900 Sobic010G117900 Sobic001G348700--Sobic010G117900 Sobic005G206601 Sobic005G206601 Sobic001G348700--Sobic005G206601 Sobic004G216600 Sobic004G216600 Sobic001G348700--Sobic004G216600 Sobic006G099900 Sobic006G099900 Sobic001G348700--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic001G348700--Sobic001G317200 Sobic001G333400--Sobic005G011200 Sobic001G333400--Sobic010G052700 Sobic002G247600 Sobic002G247600 Sobic001G333400--Sobic002G247600 Sobic007G141500 Sobic007G141500 Sobic001G333400--Sobic007G141500 Sobic001G503100 Sobic001G503100 Sobic001G333400--Sobic001G503100 Sobic001G333400--Sobic002G004900 Sobic006G125100 Sobic006G125100 Sobic001G333400--Sobic006G125100 Sobic001G333400--Sobic002G336700 Sobic001G333400--Sobic001G187200 Sobic004G221500--Sobic010G084700 Sobic004G221500--Sobic006G084600 Sobic004G221500--Sobic001G348700 Sobic004G221500--Sobic002G184200 Sobic001G423800 Sobic001G423800 Sobic004G221500--Sobic001G423800 Sobic004G221500--Sobic010G084100 Sobic004G221500--Sobic003G252800 Sobic003G286600 Sobic003G286600 Sobic004G221500--Sobic003G286600 Sobic004G221500--Sobic010G117900 Sobic010G259500--Sobic001G365100 Sobic001G402200 Sobic001G402200 Sobic010G259500--Sobic001G402200 Sobic007G039600 Sobic007G039600 Sobic010G259500--Sobic007G039600 Sobic003G364000 Sobic003G364000 Sobic010G259500--Sobic003G364000 Sobic010G259500--Sobic007G155100 Sobic003G307801 Sobic003G307801 Sobic010G259500--Sobic003G307801 Sobic010G066700 Sobic010G066700 Sobic010G259500--Sobic010G066700 Sobic010G088700 Sobic010G088700 Sobic010G259500--Sobic010G088700 Sobic010G259500--Sobic005G051500 Sobic001G365100--Sobic010G259500 Sobic001G365100--Sobic007G155100 Sobic004G229800 Sobic004G229800 Sobic001G365100--Sobic004G229800 Sobic001G365100--Sobic007G039600 Sobic001G365100--Sobic006G084600 Sobic007G057000 Sobic007G057000 Sobic001G365100--Sobic007G057000 Sobic003G317100 Sobic003G317100 Sobic001G365100--Sobic003G317100 Sobic003G437200 Sobic003G437200 Sobic001G365100--Sobic003G437200 Sobic001G365100--Sobic010G066700 Sobic004G117600 Sobic004G117600 Sobic002G290500--Sobic004G117600 Sobic002G419500 Sobic002G419500 Sobic002G290500--Sobic002G419500 Sobic008G111500 Sobic008G111500 Sobic002G290500--Sobic008G111500 Sobic008G082200 Sobic008G082200 Sobic002G290500--Sobic008G082200 Sobic002G338250 Sobic002G338250 Sobic002G290500--Sobic002G338250 Sobic002G290500--Sobic001G365100 Sobic002G290500--Sobic010G259500 Sobic003G191500 Sobic003G191500 Sobic002G290500--Sobic003G191500 Sobic001G447100 Sobic001G447100 Sobic002G290500--Sobic001G447100 Sobic004G071650--Sobic010G084100 Sobic004G071650--Sobic010G084700 Sobic003G116800 Sobic003G116800 Sobic004G071650--Sobic003G116800 Sobic004G071650--Sobic005G045900 Sobic004G071650--Sobic003G286600 Sobic004G071650--Sobic001G348700 Sobic004G071650--Sobic004G221500 Sobic004G071650--Sobic005G206601 Sobic001G487300 Sobic001G487300 Sobic004G071650--Sobic001G487300
Octagon: transcription factors


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