Gene annotation
Transcriptome id Sobic.005G217101.1
Synonym -
Functional annotation -
UniProt A0A1Z5RJU7
Pfam PF01095
Panther DB PTHR31321 PTHR31321:SF27
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT5G19730 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os11g45720.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a004178 , Zm00025a029125
Brachypodium -
Barley HORVU5Hr1G022590.3 , HORVU4Hr1G028830.4 , HORVU4Hr1G028830.6 , HORVU4Hr1G028830.1 , HORVU4Hr1G028830.3 , HORVU4Hr1G028830.2 , HORVU4Hr1G028810.6 , HORVU4Hr1G028810.5 , HORVU4Hr1G028810.4 , HORVU4Hr1G028810.3 , HORVU4Hr1G028810.2 , HORVU4Hr1G028810.1 , HORVU5Hr1G022590.1 , HORVU5Hr1G022590.2 , HORVU4Hr1G028830.5
Wheat TraesCS4A02G172100 , TraesCS5B02G092700 , TraesCS4D02G143100 , TraesCSU02G067500 , TraesCS5D02G099300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G221932 - -
2 Sobic.007G080100 DNA binding protein, putative, expressed -
3 Sobic.009G091000 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
4 Sobic.008G097800 CAMK_CAMK_like.47 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.005G035200 - -
6 Sobic.008G011901 - K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
7 Sobic.004G024800 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
8 Sobic.009G252000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
9 Sobic.002G145400 octicosapeptide/Phox/Bem1p, putative, expressed -
10 Sobic.001G351600 hydrolase protein, putative, expressed -
11 Sobic.010G254100 protein kinase APK1B, chloroplast precursor, putative, expressed -
12 Sobic.004G222400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
13 Sobic.010G034300 pectate lyase precursor, putative, expressed K01728: pectate lyase
14 Sobic.004G336401 - -
15 Sobic.008G099000 protein of unknown function domain containing protein, expressed -
16 Sobic.001G539880 - -
17 Sobic.003G195400 - -
18 Sobic.001G036200 - -
19 Sobic.005G035250 - -
20 Sobic.002G323000 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic005G217101 Sobic005G217101 Sobic007G221932 Sobic007G221932 Sobic005G217101--Sobic007G221932 Sobic007G080100 Sobic007G080100 Sobic005G217101--Sobic007G080100 Sobic009G091000 Sobic009G091000 Sobic005G217101--Sobic009G091000 Sobic008G097800 Sobic008G097800 Sobic005G217101--Sobic008G097800 Sobic005G035200 Sobic005G035200 Sobic005G217101--Sobic005G035200 Sobic008G011901 Sobic008G011901 Sobic005G217101--Sobic008G011901 Sobic004G024800 Sobic004G024800 Sobic005G217101--Sobic004G024800 Sobic009G252000 Sobic009G252000 Sobic005G217101--Sobic009G252000 Sobic002G145400 Sobic002G145400 Sobic005G217101--Sobic002G145400 Sobic007G221932--Sobic009G091000 Sobic007G221932--Sobic008G097800 Sobic007G221932--Sobic009G252000 Sobic007G221932--Sobic005G035200 Sobic007G221932--Sobic002G145400 Sobic004G336401 Sobic004G336401 Sobic007G221932--Sobic004G336401 Sobic010G254100 Sobic010G254100 Sobic007G221932--Sobic010G254100 Sobic010G034300 Sobic010G034300 Sobic007G221932--Sobic010G034300 Sobic007G221932--Sobic007G080100 Sobic007G080100--Sobic008G011901 Sobic007G080100--Sobic004G024800 Sobic007G080100--Sobic005G035200 Sobic007G080100--Sobic007G221932 Sobic001G539880 Sobic001G539880 Sobic007G080100--Sobic001G539880 Sobic007G080100--Sobic002G145400 Sobic003G195400 Sobic003G195400 Sobic007G080100--Sobic003G195400 Sobic005G035250 Sobic005G035250 Sobic007G080100--Sobic005G035250 Sobic007G080100--Sobic008G097800 Sobic009G091000--Sobic009G252000 Sobic009G091000--Sobic007G221932 Sobic009G091000--Sobic008G097800 Sobic009G091000--Sobic010G034300 Sobic009G091000--Sobic010G254100 Sobic009G091000--Sobic004G336401 Sobic001G466100 Sobic001G466100 Sobic009G091000--Sobic001G466100 Sobic001G351600 Sobic001G351600 Sobic009G091000--Sobic001G351600 Sobic009G091000--Sobic005G035200 Sobic008G097800--Sobic007G221932 Sobic008G097800--Sobic004G336401 Sobic008G097800--Sobic009G091000 Sobic008G097800--Sobic009G252000 Sobic008G097800--Sobic010G254100 Sobic008G097800--Sobic010G034300 Sobic008G097800--Sobic005G035200 Sobic008G097800--Sobic002G145400 Sobic008G097800--Sobic004G024800 Sobic005G035200--Sobic004G024800 Sobic005G035200--Sobic002G145400 Sobic005G035200--Sobic004G336401 Sobic005G035200--Sobic007G221932 Sobic005G035200--Sobic001G539880 Sobic005G035200--Sobic008G097800 Sobic005G035200--Sobic003G195400 Sobic005G035200--Sobic007G080100 Sobic007G148233 Sobic007G148233 Sobic005G035200--Sobic007G148233 Sobic008G011901--Sobic007G080100 Sobic008G011901--Sobic004G024800 Sobic008G011901--Sobic005G035200 Sobic008G011901--Sobic007G221932 Sobic008G011901--Sobic002G145400 Sobic008G011901--Sobic001G539880 Sobic008G011901--Sobic008G097800 Sobic008G011901--Sobic003G195400 Sobic008G011901--Sobic009G091000 Sobic004G024800--Sobic001G539880 Sobic004G024800--Sobic005G035200 Sobic004G024800--Sobic007G080100 Sobic004G024800--Sobic003G195400 Sobic004G024800--Sobic007G148233 Sobic004G024800--Sobic008G011901 Sobic004G024800--Sobic002G145400 Sobic004G024800--Sobic007G221932 Sobic004G024800--Sobic005G035250 Sobic009G252000--Sobic009G091000 Sobic009G252000--Sobic007G221932 Sobic009G252000--Sobic008G097800 Sobic009G252000--Sobic010G034300 Sobic009G252000--Sobic010G254100 Sobic009G252000--Sobic004G336401 Sobic009G252000--Sobic001G466100 Sobic009G252000--Sobic005G035200 Sobic009G252000--Sobic002G145400 Sobic002G145400--Sobic005G035200 Sobic002G145400--Sobic008G097800 Sobic002G145400--Sobic004G336401 Sobic002G145400--Sobic007G221932 Sobic002G145400--Sobic004G024800 Sobic002G145400--Sobic010G254100 Sobic002G145400--Sobic007G080100 Sobic002G145400--Sobic009G091000 Sobic002G145400--Sobic003G195400
Octagon: transcription factors


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