Gene annotation
Transcriptome id Sobic.006G048400.1
Synonym Sb06g012300
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5YED0
Pfam -
Panther DB PTHR34280 PTHR34280:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01860 : -
RAP-DB (Rice) LOC_Os04g31110.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G076350 - -
2 Sobic.001G229850 - -
3 Sobic.002G074900 receptor kinase, putative, expressed -
4 Sobic.003G312900 - -
5 Sobic.006G223101 - -
6 Sobic.001G226401 - K06995: uncharacterized protein
7 Sobic.001G431600 lectin-like receptor kinase, putative, expressed -
8 Sobic.006G145300 Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed -
9 Sobic.005G090800 PHD-finger domain containing protein, putative, expressed -
10 Sobic.003G312800 - -
11 Sobic.004G209100 GRAM domain containing protein, expressed -
12 Sobic.006G052250 - -
13 Sobic.008G132500 pleiotropic drug resistance protein 15, putative, expressed -
14 Sobic.008G115200 OsFBX114 - F-box domain containing protein, expressed -
15 Sobic.003G334400 verticillium wilt disease resistance protein precursor, putative, expressed -
16 Sobic.007G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.010G274700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@receptor kinase, putative, expressed -
18 Sobic.003G335100 leucine-rich repeat family protein, putative, expressed -
19 Sobic.009G109600 expressed protein -
20 Sobic.003G335000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine-rich repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic006G048400 Sobic006G048400 Sobic002G076350 Sobic002G076350 Sobic006G048400--Sobic002G076350 Sobic001G229850 Sobic001G229850 Sobic006G048400--Sobic001G229850 Sobic002G074900 Sobic002G074900 Sobic006G048400--Sobic002G074900 Sobic003G312900 Sobic003G312900 Sobic006G048400--Sobic003G312900 Sobic006G223101 Sobic006G223101 Sobic006G048400--Sobic006G223101 Sobic001G226401 Sobic001G226401 Sobic006G048400--Sobic001G226401 Sobic001G431600 Sobic001G431600 Sobic006G048400--Sobic001G431600 Sobic006G145300 Sobic006G145300 Sobic006G048400--Sobic006G145300 Sobic005G090800 Sobic005G090800 Sobic006G048400--Sobic005G090800 Sobic002G076350--Sobic006G048400 Sobic006G052250 Sobic006G052250 Sobic002G076350--Sobic006G052250 Sobic001G136850 Sobic001G136850 Sobic002G076350--Sobic001G136850 Sobic002G076350--Sobic003G312900 Sobic002G076350--Sobic002G074900 Sobic002G076350--Sobic001G229850 Sobic006G146700 Sobic006G146700 Sobic002G076350--Sobic006G146700 Sobic006G263250 Sobic006G263250 Sobic002G076350--Sobic006G263250 Sobic005G180850 Sobic005G180850 Sobic002G076350--Sobic005G180850 Sobic001G229850--Sobic003G312900 Sobic001G229850--Sobic006G223101 Sobic001G229850--Sobic002G074900 Sobic006G258100 Sobic006G258100 Sobic001G229850--Sobic006G258100 Sobic003G069400 Sobic003G069400 Sobic001G229850--Sobic003G069400 Sobic001G229850--Sobic006G048400 Sobic003G335000 Sobic003G335000 Sobic001G229850--Sobic003G335000 Sobic002G181066 Sobic002G181066 Sobic001G229850--Sobic002G181066 Sobic003G335100 Sobic003G335100 Sobic001G229850--Sobic003G335100 Sobic002G256250 Sobic002G256250 Sobic002G074900--Sobic002G256250 Sobic007G004400 Sobic007G004400 Sobic002G074900--Sobic007G004400 Sobic007G046700 Sobic007G046700 Sobic002G074900--Sobic007G046700 Sobic008G115200 Sobic008G115200 Sobic002G074900--Sobic008G115200 Sobic002G074900--Sobic003G335100 Sobic008G119600 Sobic008G119600 Sobic002G074900--Sobic008G119600 Sobic001G340100 Sobic001G340100 Sobic002G074900--Sobic001G340100 Sobic004G133201 Sobic004G133201 Sobic002G074900--Sobic004G133201 Sobic003G169550 Sobic003G169550 Sobic002G074900--Sobic003G169550 Sobic003G312800 Sobic003G312800 Sobic003G312900--Sobic003G312800 Sobic004G209100 Sobic004G209100 Sobic003G312900--Sobic004G209100 Sobic003G312900--Sobic001G229850 Sobic003G312900--Sobic005G180850 Sobic001G190900 Sobic001G190900 Sobic003G312900--Sobic001G190900 Sobic008G132500 Sobic008G132500 Sobic003G312900--Sobic008G132500 Sobic003G312900--Sobic001G226401 Sobic005G118800 Sobic005G118800 Sobic003G312900--Sobic005G118800 Sobic003G232600 Sobic003G232600 Sobic003G312900--Sobic003G232600 Sobic006G223601 Sobic006G223601 Sobic006G223101--Sobic006G223601 Sobic006G223101--Sobic003G335100 Sobic006G223101--Sobic007G004400 Sobic003G406850 Sobic003G406850 Sobic006G223101--Sobic003G406850 Sobic006G223101--Sobic008G115200 Sobic002G147550 Sobic002G147550 Sobic006G223101--Sobic002G147550 Sobic006G223101--Sobic001G229850 Sobic003G112100 Sobic003G112100 Sobic006G223101--Sobic003G112100 Sobic006G223101--Sobic001G431600 Sobic001G226401--Sobic005G090800 Sobic001G226401--Sobic002G074900 Sobic002G009000 Sobic002G009000 Sobic001G226401--Sobic002G009000 Sobic001G226401--Sobic003G312900 Sobic001G226401--Sobic008G132500 Sobic002G067900 Sobic002G067900 Sobic001G226401--Sobic002G067900 Sobic009G210250 Sobic009G210250 Sobic001G226401--Sobic009G210250 Sobic001G016050 Sobic001G016050 Sobic001G226401--Sobic001G016050 Sobic001G250750 Sobic001G250750 Sobic001G226401--Sobic001G250750 Sobic001G431600--Sobic007G004400 Sobic001G431600--Sobic006G223101 Sobic001G431600--Sobic008G119600 Sobic001G431600--Sobic003G335100 Sobic001G431600--Sobic002G074900 Sobic002G053300 Sobic002G053300 Sobic001G431600--Sobic002G053300 Sobic007G190466 Sobic007G190466 Sobic001G431600--Sobic007G190466 Sobic004G138100 Sobic004G138100 Sobic001G431600--Sobic004G138100 Sobic001G431600--Sobic002G256250 Sobic006G145300--Sobic004G209100 Sobic006G145300--Sobic006G223101 Sobic006G145300--Sobic008G115200 Sobic006G145300--Sobic005G090800 Sobic003G251000 Sobic003G251000 Sobic006G145300--Sobic003G251000 Sobic010G235100 Sobic010G235100 Sobic006G145300--Sobic010G235100 Sobic006G145300--Sobic007G004400 Sobic010G136700 Sobic010G136700 Sobic006G145300--Sobic010G136700 Sobic006G145300--Sobic003G232600 Sobic005G090800--Sobic001G226401 Sobic005G090800--Sobic002G067900 Sobic005G090800--Sobic001G016050 Sobic005G090800--Sobic010G136700 Sobic005G090800--Sobic010G235100 Sobic005G090800--Sobic001G250750 Sobic005G090800--Sobic003G232600 Sobic005G090800--Sobic008G115200 Sobic005G090800--Sobic002G074900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.