Gene annotation
Transcriptome id Sobic.005G090800.1
Synonym
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A1B6PR58
Pfam PF00628
Panther DB PTHR15856 PTHR15856:SF31
NCBI CDD KOG1844; PHD Zn-finger proteins
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G33420 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os11g12650.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a035364 , Zm00025a029521
Brachypodium KQJ88865 , KQJ88866
Barley HORVU4Hr1G015670.9 , HORVU4Hr1G015670.17 , HORVU4Hr1G015670.16 , HORVU4Hr1G015670.15 , HORVU4Hr1G015670.14 , HORVU4Hr1G015670.13 , HORVU4Hr1G015670.12 , HORVU4Hr1G015670.11 , HORVU4Hr1G015670.10 , HORVU4Hr1G015670.8 , HORVU4Hr1G015670.7 , HORVU4Hr1G015670.6 , HORVU4Hr1G015670.3 , HORVU4Hr1G015670.2
Wheat TraesCS4B02G090700 , TraesCS4A02G225500 , TraesCS4D02G087800
Populus PNT07533


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G226401 - K06995: uncharacterized protein
2 Sobic.002G067900 - -
3 Sobic.001G016050 - -
4 Sobic.010G136700 - -
5 Sobic.010G235100 leucine rich repeat protein, putative, expressed -
6 Sobic.001G250750 - -
7 Sobic.003G232600 polygalacturonase, putative, expressed -
8 Sobic.008G115200 OsFBX114 - F-box domain containing protein, expressed -
9 Sobic.002G074900 receptor kinase, putative, expressed -
10 Sobic.007G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.008G132500 pleiotropic drug resistance protein 15, putative, expressed -
12 Sobic.002G009000 - -
13 Sobic.008G119600 Leucine Rich Repeat family protein, expressed -
14 Sobic.006G145300 Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed -
15 Sobic.010G132400 Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
16 Sobic.004G209100 GRAM domain containing protein, expressed -
17 Sobic.009G210250 - -
18 Sobic.007G090433 - -
19 Sobic.001G373850 - -
20 Sobic.003G312900 - -


Gene co-expression network
sample Sobic005G090800 Sobic005G090800 Sobic001G226401 Sobic001G226401 Sobic005G090800--Sobic001G226401 Sobic002G067900 Sobic002G067900 Sobic005G090800--Sobic002G067900 Sobic001G016050 Sobic001G016050 Sobic005G090800--Sobic001G016050 Sobic010G136700 Sobic010G136700 Sobic005G090800--Sobic010G136700 Sobic010G235100 Sobic010G235100 Sobic005G090800--Sobic010G235100 Sobic001G250750 Sobic001G250750 Sobic005G090800--Sobic001G250750 Sobic003G232600 Sobic003G232600 Sobic005G090800--Sobic003G232600 Sobic008G115200 Sobic008G115200 Sobic005G090800--Sobic008G115200 Sobic002G074900 Sobic002G074900 Sobic005G090800--Sobic002G074900 Sobic001G226401--Sobic005G090800 Sobic001G226401--Sobic002G074900 Sobic002G009000 Sobic002G009000 Sobic001G226401--Sobic002G009000 Sobic003G312900 Sobic003G312900 Sobic001G226401--Sobic003G312900 Sobic008G132500 Sobic008G132500 Sobic001G226401--Sobic008G132500 Sobic001G226401--Sobic002G067900 Sobic009G210250 Sobic009G210250 Sobic001G226401--Sobic009G210250 Sobic001G226401--Sobic001G016050 Sobic001G226401--Sobic001G250750 Sobic002G067900--Sobic005G090800 Sobic002G067900--Sobic003G232600 Sobic001G340100 Sobic001G340100 Sobic002G067900--Sobic001G340100 Sobic007G004400 Sobic007G004400 Sobic002G067900--Sobic007G004400 Sobic001G400601 Sobic001G400601 Sobic002G067900--Sobic001G400601 Sobic002G067900--Sobic010G235100 Sobic002G067900--Sobic002G074900 Sobic002G067900--Sobic001G250750 Sobic002G067900--Sobic008G115200 Sobic001G016050--Sobic010G136700 Sobic001G016050--Sobic005G090800 Sobic007G090433 Sobic007G090433 Sobic001G016050--Sobic007G090433 Sobic010G011100 Sobic010G011100 Sobic001G016050--Sobic010G011100 Sobic001G016050--Sobic008G115200 Sobic010G132400 Sobic010G132400 Sobic001G016050--Sobic010G132400 Sobic004G276600 Sobic004G276600 Sobic001G016050--Sobic004G276600 Sobic008G119600 Sobic008G119600 Sobic001G016050--Sobic008G119600 Sobic001G255866 Sobic001G255866 Sobic001G016050--Sobic001G255866 Sobic010G136700--Sobic008G119600 Sobic010G136700--Sobic001G016050 Sobic010G136700--Sobic010G132400 Sobic010G136700--Sobic008G115200 Sobic006G107766 Sobic006G107766 Sobic010G136700--Sobic006G107766 Sobic010G136700--Sobic007G004400 Sobic010G136700--Sobic007G090433 Sobic010G136700--Sobic005G090800 Sobic002G212900 Sobic002G212900 Sobic010G136700--Sobic002G212900 Sobic010G235100--Sobic001G250750 Sobic010G235100--Sobic008G132500 Sobic010G235100--Sobic003G232600 Sobic010G235100--Sobic002G009000 Sobic010G235100--Sobic002G067900 Sobic005G118800 Sobic005G118800 Sobic010G235100--Sobic005G118800 Sobic004G072300 Sobic004G072300 Sobic010G235100--Sobic004G072300 Sobic010G235100--Sobic002G074900 Sobic010G235100--Sobic005G090800 Sobic001G250750--Sobic010G235100 Sobic001G250750--Sobic002G009000 Sobic001G250750--Sobic008G132500 Sobic007G182300 Sobic007G182300 Sobic001G250750--Sobic007G182300 Sobic003G109150 Sobic003G109150 Sobic001G250750--Sobic003G109150 Sobic001G250750--Sobic003G232600 Sobic003G219300 Sobic003G219300 Sobic001G250750--Sobic003G219300 Sobic001G250750--Sobic002G067900 Sobic001G250750--Sobic005G090800 Sobic003G232600--Sobic010G235100 Sobic003G232600--Sobic002G067900 Sobic003G232600--Sobic001G250750 Sobic003G232600--Sobic005G090800 Sobic003G232600--Sobic008G132500 Sobic003G232600--Sobic002G009000 Sobic004G209100 Sobic004G209100 Sobic003G232600--Sobic004G209100 Sobic003G232600--Sobic003G312900 Sobic003G232600--Sobic010G136700 Sobic004G133201 Sobic004G133201 Sobic008G115200--Sobic004G133201 Sobic008G115200--Sobic007G004400 Sobic008G115200--Sobic010G136700 Sobic008G115200--Sobic006G107766 Sobic006G176900 Sobic006G176900 Sobic008G115200--Sobic006G176900 Sobic008G115200--Sobic008G119600 Sobic003G394701 Sobic003G394701 Sobic008G115200--Sobic003G394701 Sobic006G223101 Sobic006G223101 Sobic008G115200--Sobic006G223101 Sobic008G115200--Sobic002G074900 Sobic002G256250 Sobic002G256250 Sobic002G074900--Sobic002G256250 Sobic002G074900--Sobic007G004400 Sobic007G046700 Sobic007G046700 Sobic002G074900--Sobic007G046700 Sobic002G074900--Sobic008G115200 Sobic003G335100 Sobic003G335100 Sobic002G074900--Sobic003G335100 Sobic002G074900--Sobic008G119600 Sobic002G074900--Sobic001G340100 Sobic002G074900--Sobic004G133201 Sobic003G169550 Sobic003G169550 Sobic002G074900--Sobic003G169550
Octagon: transcription factors


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