Gene annotation
Transcriptome id Sobic.003G232600.1
Synonym Sb03g029030
Functional annotation polygalacturonase, putative, expressed
UniProt C5XEI6
Pfam PF12708
Panther DB PTHR31375:SF14 PTHR31375
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60590 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os01g44970.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a028301 , Zm00025a038646
Brachypodium PNT72456 , PNT72457 , KQK04649
Barley HORVU3Hr1G056270.4 , HORVU3Hr1G031180.1 , HORVU3Hr1G031180.2 , HORVU3Hr1G056270.20 , HORVU3Hr1G056270.21 , HORVU3Hr1G056270.22 , HORVU3Hr1G056270.23 , HORVU3Hr1G056270.24 , HORVU3Hr1G056270.25 , HORVU3Hr1G056270.26 , HORVU3Hr1G056270.27 , HORVU3Hr1G056270.28 , HORVU3Hr1G056270.3 , HORVU3Hr1G056270.2 , HORVU3Hr1G056270.5 , HORVU3Hr1G056270.7 , HORVU3Hr1G056270.6 , HORVU3Hr1G056270.9 , HORVU3Hr1G056270.15 , HORVU3Hr1G056270.14 , HORVU3Hr1G056270.17 , HORVU3Hr1G056270.16 , HORVU3Hr1G056270.11 , HORVU3Hr1G056270.10 , HORVU3Hr1G056270.13 , HORVU3Hr1G056270.12 , HORVU3Hr1G056270.19 , HORVU3Hr1G056270.18
Wheat TraesCS3B02G258600 , TraesCS3A02G225800 , TraesCS3A02G225800 , TraesCS3B02G258600 , TraesCS3B02G258600 , TraesCS3D02G223900
Populus -


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cDNA sequences
Sobic.003G232600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G235100 leucine rich repeat protein, putative, expressed -
2 Sobic.002G067900 - -
3 Sobic.001G250750 - -
4 Sobic.005G090800 PHD-finger domain containing protein, putative, expressed -
5 Sobic.008G132500 pleiotropic drug resistance protein 15, putative, expressed -
6 Sobic.002G009000 - -
7 Sobic.004G209100 GRAM domain containing protein, expressed -
8 Sobic.003G312900 - -
9 Sobic.010G136700 - -
10 Sobic.008G115200 OsFBX114 - F-box domain containing protein, expressed -
11 Sobic.007G004400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.005G118800 NBS-LRR disease resistance protein, putative, expressed -
13 Sobic.001G229850 - -
14 Sobic.006G145300 Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed -
15 Sobic.003G375500 PHD-finger domain containing protein, putative, expressed -
16 Sobic.001G016050 - -
17 Sobic.002G297100 glucan endo-1,3-beta-glucosidase 12 precursor, putative, expressed -
18 Sobic.009G030501 - -
19 Sobic.001G226401 - K06995: uncharacterized protein
20 Sobic.006G223101 - -


Gene co-expression network
sample Sobic003G232600 Sobic003G232600 Sobic010G235100 Sobic010G235100 Sobic003G232600--Sobic010G235100 Sobic002G067900 Sobic002G067900 Sobic003G232600--Sobic002G067900 Sobic001G250750 Sobic001G250750 Sobic003G232600--Sobic001G250750 Sobic005G090800 Sobic005G090800 Sobic003G232600--Sobic005G090800 Sobic008G132500 Sobic008G132500 Sobic003G232600--Sobic008G132500 Sobic002G009000 Sobic002G009000 Sobic003G232600--Sobic002G009000 Sobic004G209100 Sobic004G209100 Sobic003G232600--Sobic004G209100 Sobic003G312900 Sobic003G312900 Sobic003G232600--Sobic003G312900 Sobic010G136700 Sobic010G136700 Sobic003G232600--Sobic010G136700 Sobic010G235100--Sobic001G250750 Sobic010G235100--Sobic008G132500 Sobic010G235100--Sobic003G232600 Sobic010G235100--Sobic002G009000 Sobic010G235100--Sobic002G067900 Sobic005G118800 Sobic005G118800 Sobic010G235100--Sobic005G118800 Sobic004G072300 Sobic004G072300 Sobic010G235100--Sobic004G072300 Sobic002G074900 Sobic002G074900 Sobic010G235100--Sobic002G074900 Sobic010G235100--Sobic005G090800 Sobic002G067900--Sobic005G090800 Sobic002G067900--Sobic003G232600 Sobic001G340100 Sobic001G340100 Sobic002G067900--Sobic001G340100 Sobic007G004400 Sobic007G004400 Sobic002G067900--Sobic007G004400 Sobic001G400601 Sobic001G400601 Sobic002G067900--Sobic001G400601 Sobic002G067900--Sobic010G235100 Sobic002G067900--Sobic002G074900 Sobic002G067900--Sobic001G250750 Sobic008G115200 Sobic008G115200 Sobic002G067900--Sobic008G115200 Sobic001G250750--Sobic010G235100 Sobic001G250750--Sobic002G009000 Sobic001G250750--Sobic008G132500 Sobic007G182300 Sobic007G182300 Sobic001G250750--Sobic007G182300 Sobic003G109150 Sobic003G109150 Sobic001G250750--Sobic003G109150 Sobic001G250750--Sobic003G232600 Sobic003G219300 Sobic003G219300 Sobic001G250750--Sobic003G219300 Sobic001G250750--Sobic002G067900 Sobic001G250750--Sobic005G090800 Sobic001G226401 Sobic001G226401 Sobic005G090800--Sobic001G226401 Sobic005G090800--Sobic002G067900 Sobic001G016050 Sobic001G016050 Sobic005G090800--Sobic001G016050 Sobic005G090800--Sobic010G136700 Sobic005G090800--Sobic010G235100 Sobic005G090800--Sobic001G250750 Sobic005G090800--Sobic003G232600 Sobic005G090800--Sobic008G115200 Sobic005G090800--Sobic002G074900 Sobic008G132500--Sobic002G009000 Sobic008G132500--Sobic001G250750 Sobic008G132500--Sobic004G209100 Sobic008G132500--Sobic010G235100 Sobic008G132500--Sobic005G118800 Sobic008G132500--Sobic003G312900 Sobic008G132500--Sobic003G219300 Sobic008G132500--Sobic003G109150 Sobic008G132500--Sobic003G232600 Sobic002G009000--Sobic001G250750 Sobic002G009000--Sobic008G132500 Sobic002G009000--Sobic010G235100 Sobic009G210250 Sobic009G210250 Sobic002G009000--Sobic009G210250 Sobic002G009000--Sobic002G074900 Sobic007G141900 Sobic007G141900 Sobic002G009000--Sobic007G141900 Sobic002G009000--Sobic005G118800 Sobic002G009000--Sobic002G067900 Sobic002G009000--Sobic003G109150 Sobic004G209100--Sobic008G132500 Sobic004G209100--Sobic003G312900 Sobic004G209100--Sobic005G118800 Sobic005G180850 Sobic005G180850 Sobic004G209100--Sobic005G180850 Sobic006G145300 Sobic006G145300 Sobic004G209100--Sobic006G145300 Sobic004G209100--Sobic010G235100 Sobic004G209100--Sobic003G232600 Sobic003G312800 Sobic003G312800 Sobic004G209100--Sobic003G312800 Sobic004G209100--Sobic005G090800 Sobic003G312900--Sobic003G312800 Sobic003G312900--Sobic004G209100 Sobic001G229850 Sobic001G229850 Sobic003G312900--Sobic001G229850 Sobic003G312900--Sobic005G180850 Sobic001G190900 Sobic001G190900 Sobic003G312900--Sobic001G190900 Sobic003G312900--Sobic008G132500 Sobic003G312900--Sobic001G226401 Sobic003G312900--Sobic005G118800 Sobic003G312900--Sobic003G232600 Sobic008G119600 Sobic008G119600 Sobic010G136700--Sobic008G119600 Sobic010G136700--Sobic001G016050 Sobic010G132400 Sobic010G132400 Sobic010G136700--Sobic010G132400 Sobic010G136700--Sobic008G115200 Sobic006G107766 Sobic006G107766 Sobic010G136700--Sobic006G107766 Sobic010G136700--Sobic007G004400 Sobic007G090433 Sobic007G090433 Sobic010G136700--Sobic007G090433 Sobic010G136700--Sobic005G090800 Sobic002G212900 Sobic002G212900 Sobic010G136700--Sobic002G212900
Octagon: transcription factors


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