Gene annotation
Transcriptome id Sobic.006G057300.1
Synonym SRG1, ATSRG1, Sb06g014550
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
leucoanthocyanidin dioxygenase, putative, expressed
UniProt C5YF79
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF96
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G17020 : senescence-related gene 1
RAP-DB (Rice) LOC_Os03g32470.1 : leucoanthocyanidin dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a003054
Brachypodium -
Barley HORVU1Hr1G077370.1
Wheat TraesCS1A02G331400 , TraesCS1A02G331400 , TraesCS1B02G345200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G122900 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
2 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
3 Sobic.001G285700 expressed protein -
4 Sobic.006G035950 - -
5 Sobic.001G121000 - -
6 Sobic.006G246800 MBTB56 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.004G355101 - -
8 Sobic.010G228300 expressed protein -
9 Sobic.007G215300 expressed protein -
10 Sobic.007G095850 - -
11 Sobic.009G142700 - -
12 Sobic.009G080233 - -
13 Sobic.002G268450 - -
14 Sobic.005G204400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
15 Sobic.004G342700 C2 domain containing protein, putative, expressed -
16 Sobic.008G176401 - -
17 Sobic.001G213150 - -
18 Sobic.003G014832 - -
19 Sobic.009G194100 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.002G407500 sex determination protein tasselseed-2, putative, expressed -


Gene co-expression network
sample Sobic006G057300 Sobic006G057300 Sobic002G122900 Sobic002G122900 Sobic006G057300--Sobic002G122900 Sobic004G101100 Sobic004G101100 Sobic006G057300--Sobic004G101100 Sobic001G285700 Sobic001G285700 Sobic006G057300--Sobic001G285700 Sobic006G035950 Sobic006G035950 Sobic006G057300--Sobic006G035950 Sobic001G121000 Sobic001G121000 Sobic006G057300--Sobic001G121000 Sobic006G246800 Sobic006G246800 Sobic006G057300--Sobic006G246800 Sobic004G355101 Sobic004G355101 Sobic006G057300--Sobic004G355101 Sobic010G228300 Sobic010G228300 Sobic006G057300--Sobic010G228300 Sobic007G215300 Sobic007G215300 Sobic006G057300--Sobic007G215300 Sobic002G122900--Sobic006G057300 Sobic009G080233 Sobic009G080233 Sobic002G122900--Sobic009G080233 Sobic002G122900--Sobic006G246800 Sobic002G122900--Sobic006G035950 Sobic002G122900--Sobic004G355101 Sobic003G014832 Sobic003G014832 Sobic002G122900--Sobic003G014832 Sobic002G122900--Sobic001G285700 Sobic004G342700 Sobic004G342700 Sobic002G122900--Sobic004G342700 Sobic008G176401 Sobic008G176401 Sobic002G122900--Sobic008G176401 Sobic004G101100--Sobic006G057300 Sobic006G194700 Sobic006G194700 Sobic004G101100--Sobic006G194700 Sobic004G072400 Sobic004G072400 Sobic004G101100--Sobic004G072400 Sobic004G233900 Sobic004G233900 Sobic004G101100--Sobic004G233900 Sobic009G133100 Sobic009G133100 Sobic004G101100--Sobic009G133100 Sobic001G160400 Sobic001G160400 Sobic004G101100--Sobic001G160400 Sobic001G058000 Sobic001G058000 Sobic004G101100--Sobic001G058000 Sobic008G010700 Sobic008G010700 Sobic004G101100--Sobic008G010700 Sobic004G101100--Sobic002G122900 Sobic001G285700--Sobic006G035950 Sobic001G285700--Sobic001G121000 Sobic001G285700--Sobic006G246800 Sobic001G285700--Sobic004G355101 Sobic001G285700--Sobic010G228300 Sobic001G285700--Sobic007G215300 Sobic007G095850 Sobic007G095850 Sobic001G285700--Sobic007G095850 Sobic009G142700 Sobic009G142700 Sobic001G285700--Sobic009G142700 Sobic002G268450 Sobic002G268450 Sobic001G285700--Sobic002G268450 Sobic006G035950--Sobic006G246800 Sobic006G035950--Sobic001G285700 Sobic006G035950--Sobic004G355101 Sobic006G035950--Sobic004G342700 Sobic006G035950--Sobic008G176401 Sobic006G035950--Sobic001G121000 Sobic006G035950--Sobic003G014832 Sobic006G035950--Sobic002G268450 Sobic006G035950--Sobic010G228300 Sobic001G121000--Sobic006G246800 Sobic001G121000--Sobic010G228300 Sobic001G121000--Sobic001G285700 Sobic001G121000--Sobic004G355101 Sobic001G121000--Sobic006G035950 Sobic001G121000--Sobic007G215300 Sobic001G121000--Sobic002G268450 Sobic001G121000--Sobic007G095850 Sobic001G121000--Sobic009G142700 Sobic006G246800--Sobic004G355101 Sobic006G246800--Sobic006G035950 Sobic006G246800--Sobic004G342700 Sobic006G246800--Sobic008G176401 Sobic006G246800--Sobic001G121000 Sobic006G246800--Sobic003G014832 Sobic006G246800--Sobic002G268450 Sobic006G246800--Sobic001G285700 Sobic006G246800--Sobic010G228300 Sobic004G355101--Sobic006G246800 Sobic004G355101--Sobic006G035950 Sobic004G355101--Sobic004G342700 Sobic004G355101--Sobic008G176401 Sobic004G355101--Sobic001G121000 Sobic004G355101--Sobic003G014832 Sobic004G355101--Sobic002G268450 Sobic004G355101--Sobic001G285700 Sobic004G355101--Sobic010G228300 Sobic010G228300--Sobic007G215300 Sobic010G228300--Sobic001G121000 Sobic010G228300--Sobic007G095850 Sobic010G228300--Sobic009G142700 Sobic001G213150 Sobic001G213150 Sobic010G228300--Sobic001G213150 Sobic010G228300--Sobic001G285700 Sobic005G204400 Sobic005G204400 Sobic010G228300--Sobic005G204400 Sobic003G060900 Sobic003G060900 Sobic010G228300--Sobic003G060900 Sobic009G029800 Sobic009G029800 Sobic010G228300--Sobic009G029800 Sobic007G215300--Sobic001G213150 Sobic007G215300--Sobic009G029800 Sobic007G215300--Sobic003G060900 Sobic007G215300--Sobic005G204400 Sobic007G215300--Sobic010G228300 Sobic007G215300--Sobic009G142700 Sobic007G215300--Sobic007G095850 Sobic010G273200 Sobic010G273200 Sobic007G215300--Sobic010G273200 Sobic005G144101 Sobic005G144101 Sobic007G215300--Sobic005G144101
Octagon: transcription factors


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