Gene annotation
Transcriptome id Sobic.009G194100.2
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z0T1
Pfam PF12678
Panther DB PTHR22763 PTHR22763:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G01980 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os12g04650.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012979
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G242350 - -
2 Sobic.009G142700 - -
3 Sobic.007G215300 expressed protein -
4 Sobic.003G154800 expressed protein -
5 Sobic.001G213150 - -
6 Sobic.007G095850 - -
7 Sobic.010G228300 expressed protein -
8 Sobic.010G238500 - -
9 Sobic.003G060900 OsFBX320 - F-box domain containing protein, expressed -
10 Sobic.009G029800 endoglucanase, putative, expressed -
11 Sobic.005G204400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
12 Sobic.001G349800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Phospholipase dalpha 1(PubMedID : 26320239)@phospholipase D, putative, expressed K01115: phospholipase D1/2
13 Sobic.010G273200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
14 Sobic.009G190900 expressed protein -
15 Sobic.001G482500 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
16 Sobic.003G046200 ATPase, putative, expressed -
17 Sobic.005G144101 - -
18 Sobic.003G141400 expressed protein -
19 Sobic.008G179100 - -
20 Sobic.001G152240 - -


Gene co-expression network
sample Sobic009G194100 Sobic009G194100 Sobic001G242350 Sobic001G242350 Sobic009G194100--Sobic001G242350 Sobic009G142700 Sobic009G142700 Sobic009G194100--Sobic009G142700 Sobic007G215300 Sobic007G215300 Sobic009G194100--Sobic007G215300 Sobic003G154800 Sobic003G154800 Sobic009G194100--Sobic003G154800 Sobic001G213150 Sobic001G213150 Sobic009G194100--Sobic001G213150 Sobic007G095850 Sobic007G095850 Sobic009G194100--Sobic007G095850 Sobic010G228300 Sobic010G228300 Sobic009G194100--Sobic010G228300 Sobic010G238500 Sobic010G238500 Sobic009G194100--Sobic010G238500 Sobic003G060900 Sobic003G060900 Sobic009G194100--Sobic003G060900 Sobic001G242350--Sobic010G228300 Sobic001G242350--Sobic007G215300 Sobic005G204400 Sobic005G204400 Sobic001G242350--Sobic005G204400 Sobic001G242350--Sobic007G095850 Sobic001G242350--Sobic001G213150 Sobic001G242350--Sobic003G060900 Sobic001G242350--Sobic009G142700 Sobic009G029800 Sobic009G029800 Sobic001G242350--Sobic009G029800 Sobic001G285700 Sobic001G285700 Sobic001G242350--Sobic001G285700 Sobic009G142700--Sobic007G215300 Sobic009G142700--Sobic001G213150 Sobic009G142700--Sobic010G228300 Sobic009G142700--Sobic009G029800 Sobic009G142700--Sobic003G060900 Sobic009G142700--Sobic005G204400 Sobic009G142700--Sobic007G095850 Sobic010G273200 Sobic010G273200 Sobic009G142700--Sobic010G273200 Sobic001G121000 Sobic001G121000 Sobic009G142700--Sobic001G121000 Sobic007G215300--Sobic001G213150 Sobic007G215300--Sobic009G029800 Sobic007G215300--Sobic003G060900 Sobic007G215300--Sobic005G204400 Sobic007G215300--Sobic010G228300 Sobic007G215300--Sobic009G142700 Sobic007G215300--Sobic007G095850 Sobic007G215300--Sobic010G273200 Sobic005G144101 Sobic005G144101 Sobic007G215300--Sobic005G144101 Sobic007G100900 Sobic007G100900 Sobic003G154800--Sobic007G100900 Sobic003G046200 Sobic003G046200 Sobic003G154800--Sobic003G046200 Sobic003G318650 Sobic003G318650 Sobic003G154800--Sobic003G318650 Sobic002G013500 Sobic002G013500 Sobic003G154800--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic003G154800--Sobic002G085700 Sobic010G140800 Sobic010G140800 Sobic003G154800--Sobic010G140800 Sobic004G327100 Sobic004G327100 Sobic003G154800--Sobic004G327100 Sobic001G349800 Sobic001G349800 Sobic003G154800--Sobic001G349800 Sobic005G201800 Sobic005G201800 Sobic003G154800--Sobic005G201800 Sobic001G213150--Sobic009G029800 Sobic001G213150--Sobic003G060900 Sobic001G213150--Sobic007G215300 Sobic001G213150--Sobic010G273200 Sobic001G213150--Sobic005G144101 Sobic001G213150--Sobic005G204400 Sobic010G091750 Sobic010G091750 Sobic001G213150--Sobic010G091750 Sobic002G103400 Sobic002G103400 Sobic001G213150--Sobic002G103400 Sobic003G141400 Sobic003G141400 Sobic001G213150--Sobic003G141400 Sobic007G095850--Sobic007G215300 Sobic007G095850--Sobic010G228300 Sobic007G095850--Sobic001G213150 Sobic007G095850--Sobic001G121000 Sobic007G095850--Sobic009G142700 Sobic007G095850--Sobic003G060900 Sobic007G095850--Sobic009G029800 Sobic007G095850--Sobic005G204400 Sobic007G095850--Sobic001G285700 Sobic010G228300--Sobic007G215300 Sobic010G228300--Sobic001G121000 Sobic010G228300--Sobic007G095850 Sobic010G228300--Sobic009G142700 Sobic010G228300--Sobic001G213150 Sobic010G228300--Sobic001G285700 Sobic010G228300--Sobic005G204400 Sobic010G228300--Sobic003G060900 Sobic010G228300--Sobic009G029800 Sobic006G246800 Sobic006G246800 Sobic010G238500--Sobic006G246800 Sobic004G355101 Sobic004G355101 Sobic010G238500--Sobic004G355101 Sobic004G342700 Sobic004G342700 Sobic010G238500--Sobic004G342700 Sobic008G176401 Sobic008G176401 Sobic010G238500--Sobic008G176401 Sobic006G035950 Sobic006G035950 Sobic010G238500--Sobic006G035950 Sobic003G014832 Sobic003G014832 Sobic010G238500--Sobic003G014832 Sobic002G268450 Sobic002G268450 Sobic010G238500--Sobic002G268450 Sobic009G174200 Sobic009G174200 Sobic010G238500--Sobic009G174200 Sobic004G087750 Sobic004G087750 Sobic010G238500--Sobic004G087750 Sobic003G060900--Sobic001G213150 Sobic003G060900--Sobic010G273200 Sobic003G060900--Sobic009G029800 Sobic003G060900--Sobic005G144101 Sobic003G060900--Sobic010G091750 Sobic003G060900--Sobic007G215300 Sobic003G060900--Sobic002G103400 Sobic001G152240 Sobic001G152240 Sobic003G060900--Sobic001G152240 Sobic003G060900--Sobic005G204400
Octagon: transcription factors


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