Gene annotation
Transcriptome id Sobic.006G158900.1
Synonym Sb06g023590
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt A0A1B6PM84
Pfam PF08659
Panther DB PTHR24322 PTHR24322:SF453
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01800 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os04g44950.1 : short-chain dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a010448
Brachypodium -
Barley -
Wheat TraesCS2A02G370900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G010100 BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed K10523: speckle-type POZ protein
2 Sobic.004G038700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR5 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
3 Sobic.005G080400 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
4 Sobic.004G011100 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.003G140600 peroxidase precursor, putative, expressed -
6 Sobic.009G088500 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.007G057400 - -
8 Sobic.007G021800 carrier, putative, expressed -
9 Sobic.008G121900 expressed protein -
10 Sobic.005G202700 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
11 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
12 Sobic.010G088800 cytokinin-O-glucosyltransferase 2, putative, expressed -
13 Sobic.005G203200 cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed -
14 Sobic.009G160800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.009G035300 expressed protein -
16 Sobic.004G203301 - -
17 Sobic.001G301300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
18 Sobic.005G073000 stress responsive protein, putative, expressed -
19 Sobic.006G172601 - -
20 Sobic.001G238000 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G158900 Sobic006G158900 Sobic005G010100 Sobic005G010100 Sobic006G158900--Sobic005G010100 Sobic004G038700 Sobic004G038700 Sobic006G158900--Sobic004G038700 Sobic005G080400 Sobic005G080400 Sobic006G158900--Sobic005G080400 Sobic004G011100 Sobic004G011100 Sobic006G158900--Sobic004G011100 Sobic003G140600 Sobic003G140600 Sobic006G158900--Sobic003G140600 Sobic009G088500 Sobic009G088500 Sobic006G158900--Sobic009G088500 Sobic007G057400 Sobic007G057400 Sobic006G158900--Sobic007G057400 Sobic007G021800 Sobic007G021800 Sobic006G158900--Sobic007G021800 Sobic008G121900 Sobic008G121900 Sobic006G158900--Sobic008G121900 Sobic005G010100--Sobic004G038700 Sobic009G035300 Sobic009G035300 Sobic005G010100--Sobic009G035300 Sobic001G264000 Sobic001G264000 Sobic005G010100--Sobic001G264000 Sobic003G203600 Sobic003G203600 Sobic005G010100--Sobic003G203600 Sobic007G165400 Sobic007G165400 Sobic005G010100--Sobic007G165400 Sobic005G010100--Sobic004G011100 Sobic003G228600 Sobic003G228600 Sobic005G010100--Sobic003G228600 Sobic005G010100--Sobic005G080400 Sobic004G349125 Sobic004G349125 Sobic005G010100--Sobic004G349125 Sobic004G038700--Sobic003G140600 Sobic004G038700--Sobic005G010100 Sobic004G038700--Sobic003G228600 Sobic004G038700--Sobic003G203600 Sobic001G238000 Sobic001G238000 Sobic004G038700--Sobic001G238000 Sobic001G238200 Sobic001G238200 Sobic004G038700--Sobic001G238200 Sobic004G038700--Sobic005G080400 Sobic004G110700 Sobic004G110700 Sobic004G038700--Sobic004G110700 Sobic010G234500 Sobic010G234500 Sobic004G038700--Sobic010G234500 Sobic005G203200 Sobic005G203200 Sobic005G080400--Sobic005G203200 Sobic002G228800 Sobic002G228800 Sobic005G080400--Sobic002G228800 Sobic005G080400--Sobic004G038700 Sobic005G202700 Sobic005G202700 Sobic005G080400--Sobic005G202700 Sobic005G080400--Sobic007G057400 Sobic005G080400--Sobic009G035300 Sobic002G326500 Sobic002G326500 Sobic005G080400--Sobic002G326500 Sobic003G351600 Sobic003G351600 Sobic005G080400--Sobic003G351600 Sobic005G166700 Sobic005G166700 Sobic005G080400--Sobic005G166700 Sobic004G011100--Sobic005G203200 Sobic003G255500 Sobic003G255500 Sobic004G011100--Sobic003G255500 Sobic001G161500 Sobic001G161500 Sobic004G011100--Sobic001G161500 Sobic004G011100--Sobic009G035300 Sobic001G416200 Sobic001G416200 Sobic004G011100--Sobic001G416200 Sobic001G302600 Sobic001G302600 Sobic004G011100--Sobic001G302600 Sobic004G011100--Sobic004G349125 Sobic004G011100--Sobic005G080400 Sobic004G011100--Sobic005G010100 Sobic010G088800 Sobic010G088800 Sobic003G140600--Sobic010G088800 Sobic003G140600--Sobic004G038700 Sobic006G172601 Sobic006G172601 Sobic003G140600--Sobic006G172601 Sobic003G140600--Sobic008G121900 Sobic006G103300 Sobic006G103300 Sobic003G140600--Sobic006G103300 Sobic003G140600--Sobic001G238200 Sobic003G140600--Sobic003G228600 Sobic007G021900 Sobic007G021900 Sobic003G140600--Sobic007G021900 Sobic003G140700 Sobic003G140700 Sobic003G140600--Sobic003G140700 Sobic009G088500--Sobic007G057400 Sobic002G385500 Sobic002G385500 Sobic009G088500--Sobic002G385500 Sobic004G322100 Sobic004G322100 Sobic009G088500--Sobic004G322100 Sobic010G096400 Sobic010G096400 Sobic009G088500--Sobic010G096400 Sobic001G360500 Sobic001G360500 Sobic009G088500--Sobic001G360500 Sobic002G261500 Sobic002G261500 Sobic009G088500--Sobic002G261500 Sobic008G019800 Sobic008G019800 Sobic009G088500--Sobic008G019800 Sobic005G063400 Sobic005G063400 Sobic009G088500--Sobic005G063400 Sobic010G152400 Sobic010G152400 Sobic009G088500--Sobic010G152400 Sobic007G057400--Sobic001G360500 Sobic010G113100 Sobic010G113100 Sobic007G057400--Sobic010G113100 Sobic003G053600 Sobic003G053600 Sobic007G057400--Sobic003G053600 Sobic007G057400--Sobic009G088500 Sobic002G101400 Sobic002G101400 Sobic007G057400--Sobic002G101400 Sobic007G057400--Sobic005G063400 Sobic006G003600 Sobic006G003600 Sobic007G057400--Sobic006G003600 Sobic006G092700 Sobic006G092700 Sobic007G057400--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic007G057400--Sobic008G164450 Sobic007G021800--Sobic004G038700 Sobic007G021800--Sobic005G080400 Sobic007G021800--Sobic003G140600 Sobic009G150600 Sobic009G150600 Sobic007G021800--Sobic009G150600 Sobic007G021800--Sobic010G234500 Sobic007G021800--Sobic001G238200 Sobic001G209300 Sobic001G209300 Sobic007G021800--Sobic001G209300 Sobic007G021800--Sobic001G238000 Sobic004G119800 Sobic004G119800 Sobic007G021800--Sobic004G119800 Sobic009G035900 Sobic009G035900 Sobic008G121900--Sobic009G035900 Sobic008G121900--Sobic003G140600 Sobic008G121900--Sobic006G172601 Sobic007G021700 Sobic007G021700 Sobic008G121900--Sobic007G021700 Sobic003G132400 Sobic003G132400 Sobic008G121900--Sobic003G132400 Sobic008G121900--Sobic010G088800 Sobic008G121900--Sobic003G228600 Sobic008G121900--Sobic006G103300 Sobic001G508532 Sobic001G508532 Sobic008G121900--Sobic001G508532
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.