Gene annotation
Transcriptome id Sobic.006G197600.1
Synonym Sb06g026980
Functional annotation RING-H2 finger protein ATL5G, putative, expressed
UniProt C5YF02
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF77
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G03550 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g50100.1 : RING-H2 finger protein ATL5G, putative, expressed
MaizeGDB (Corn) Zm00025a021602
Brachypodium KQK00839
Barley HORVU6Hr1G067020.4 , HORVU6Hr1G067020.1 , HORVU6Hr1G067020.3 , HORVU6Hr1G067020.2
Wheat -
Populus -


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cDNA sequences
Sobic.006G197600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G156800 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.003G111600 expressed protein -
3 Sobic.005G102200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
4 Sobic.003G191800 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.010G008000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.006G123700 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
7 Sobic.002G101800 OsFBX281 - F-box domain containing protein, expressed -
8 Sobic.007G072400 phosphoribosyl transferase, putative, expressed -
9 Sobic.006G169300 - -
10 Sobic.001G137200 homeobox domain containing protein, expressed -
11 Sobic.007G139000 ZF-HD protein dimerisation region containing protein, expressed -
12 Sobic.010G152700 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.001G303000 zinc finger family protein, putative, expressed -
14 Sobic.003G104900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase
15 Sobic.001G104400 expressed protein -
16 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
17 Sobic.004G153700 expressed protein -
18 Sobic.010G002850 - -
19 Sobic.001G483700 Cupin domain containing protein, expressed -
20 Sobic.002G003100 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase


Gene co-expression network
sample Sobic006G197600 Sobic006G197600 Sobic010G156800 Sobic010G156800 Sobic006G197600--Sobic010G156800 Sobic003G111600 Sobic003G111600 Sobic006G197600--Sobic003G111600 Sobic005G102200 Sobic005G102200 Sobic006G197600--Sobic005G102200 Sobic003G191800 Sobic003G191800 Sobic006G197600--Sobic003G191800 Sobic010G008000 Sobic010G008000 Sobic006G197600--Sobic010G008000 Sobic006G123700 Sobic006G123700 Sobic006G197600--Sobic006G123700 Sobic002G101800 Sobic002G101800 Sobic006G197600--Sobic002G101800 Sobic007G072400 Sobic007G072400 Sobic006G197600--Sobic007G072400 Sobic006G169300 Sobic006G169300 Sobic006G197600--Sobic006G169300 Sobic001G483700 Sobic001G483700 Sobic010G156800--Sobic001G483700 Sobic010G156800--Sobic005G102200 Sobic010G156800--Sobic006G169300 Sobic009G223700 Sobic009G223700 Sobic010G156800--Sobic009G223700 Sobic001G516200 Sobic001G516200 Sobic010G156800--Sobic001G516200 Sobic007G183000 Sobic007G183000 Sobic010G156800--Sobic007G183000 Sobic010G156800--Sobic003G191800 Sobic001G137200 Sobic001G137200 Sobic010G156800--Sobic001G137200 Sobic004G224300 Sobic004G224300 Sobic010G156800--Sobic004G224300 Sobic003G111600--Sobic005G102200 Sobic003G111600--Sobic003G191800 Sobic007G139000 Sobic007G139000 Sobic003G111600--Sobic007G139000 Sobic003G111600--Sobic002G101800 Sobic003G111600--Sobic001G483700 Sobic003G111600--Sobic001G137200 Sobic010G152700 Sobic010G152700 Sobic003G111600--Sobic010G152700 Sobic002G285525 Sobic002G285525 Sobic003G111600--Sobic002G285525 Sobic009G187500 Sobic009G187500 Sobic003G111600--Sobic009G187500 Sobic005G102200--Sobic003G191800 Sobic005G102200--Sobic010G152700 Sobic005G102200--Sobic001G137200 Sobic005G102200--Sobic001G483700 Sobic005G102200--Sobic002G101800 Sobic005G102200--Sobic002G285525 Sobic001G527400 Sobic001G527400 Sobic005G102200--Sobic001G527400 Sobic005G209800 Sobic005G209800 Sobic005G102200--Sobic005G209800 Sobic008G002100 Sobic008G002100 Sobic005G102200--Sobic008G002100 Sobic003G191800--Sobic005G102200 Sobic003G191800--Sobic010G152700 Sobic003G191800--Sobic001G137200 Sobic003G191800--Sobic007G139000 Sobic003G191800--Sobic001G483700 Sobic003G191800--Sobic005G209800 Sobic003G191800--Sobic007G072400 Sobic006G171000 Sobic006G171000 Sobic003G191800--Sobic006G171000 Sobic003G191800--Sobic008G002100 Sobic004G153700 Sobic004G153700 Sobic010G008000--Sobic004G153700 Sobic003G083700 Sobic003G083700 Sobic010G008000--Sobic003G083700 Sobic010G259200 Sobic010G259200 Sobic010G008000--Sobic010G259200 Sobic007G206700 Sobic007G206700 Sobic010G008000--Sobic007G206700 Sobic010G119600 Sobic010G119600 Sobic010G008000--Sobic010G119600 Sobic002G001300 Sobic002G001300 Sobic010G008000--Sobic002G001300 Sobic010G194500 Sobic010G194500 Sobic010G008000--Sobic010G194500 Sobic003G390300 Sobic003G390300 Sobic010G008000--Sobic003G390300 Sobic001G402701 Sobic001G402701 Sobic010G008000--Sobic001G402701 Sobic006G123700--Sobic002G101800 Sobic006G123700--Sobic004G224300 Sobic006G123700--Sobic001G137200 Sobic002G048250 Sobic002G048250 Sobic006G123700--Sobic002G048250 Sobic003G173032 Sobic003G173032 Sobic006G123700--Sobic003G173032 Sobic006G123700--Sobic005G209800 Sobic006G123700--Sobic008G002100 Sobic006G123700--Sobic001G527400 Sobic006G123700--Sobic007G183000 Sobic002G101800--Sobic005G102200 Sobic002G101800--Sobic003G191800 Sobic002G101800--Sobic006G123700 Sobic002G101800--Sobic010G152700 Sobic002G101800--Sobic007G139000 Sobic002G101800--Sobic001G137200 Sobic002G101800--Sobic001G483700 Sobic002G101800--Sobic002G285525 Sobic002G101800--Sobic003G111600 Sobic007G072400--Sobic001G527400 Sobic007G072400--Sobic006G171000 Sobic007G072400--Sobic008G002100 Sobic007G072400--Sobic005G209800 Sobic007G072400--Sobic007G183000 Sobic008G023000 Sobic008G023000 Sobic007G072400--Sobic008G023000 Sobic004G226300 Sobic004G226300 Sobic007G072400--Sobic004G226300 Sobic007G072400--Sobic003G173032 Sobic007G072400--Sobic001G137200 Sobic006G169300--Sobic009G223700 Sobic006G169300--Sobic002G285525 Sobic006G169300--Sobic004G224300 Sobic010G002850 Sobic010G002850 Sobic006G169300--Sobic010G002850 Sobic006G169300--Sobic004G226300 Sobic006G169300--Sobic007G183000 Sobic006G169300--Sobic006G171000 Sobic006G169300--Sobic001G527400 Sobic006G169300--Sobic002G048250
Octagon: transcription factors


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