Gene annotation
Transcriptome id Sobic.006G225700.1
Synonym
Functional annotation expressed protein
UniProt C5YGK0
Pfam PF00097 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF729
NCBI CDD KOG1001; Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G50410 : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
RAP-DB (Rice) LOC_Os04g53720.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046654 , Zm00025a013030 , Zm00025a029989 , Zm00025a057100
Brachypodium KQJ84775 , KQJ84776 , KQJ84777 , KQJ95139 , PNT61905
Barley HORVU7Hr1G067480.19 , HORVU7Hr1G067480.10 , HORVU7Hr1G067480.12 , HORVU7Hr1G067480.13 , HORVU7Hr1G067480.14 , HORVU7Hr1G067480.15 , HORVU7Hr1G067480.16 , HORVU7Hr1G067480.21 , HORVU7Hr1G067480.20 , HORVU7Hr1G067480.22 , HORVU7Hr1G067480.8 , HORVU7Hr1G067480.9 , HORVU7Hr1G067480.2 , HORVU7Hr1G067480.3 , HORVU7Hr1G067480.1 , HORVU7Hr1G067480.6 , HORVU7Hr1G067480.7 , HORVU7Hr1G067480.4 , HORVU7Hr1G067480.5
Wheat TraesCS2A02G479900 , TraesCS2A02G479900 , TraesCS2B02G504600 , TraesCS2B02G504600 , TraesCS2D02G479100 , TraesCS2D02G479100 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G241100 Leucine Rich Repeat domain containing protein, expressed -
2 Sobic.006G222000 MBTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.004G227550 - -
4 Sobic.004G227550 - -
5 Sobic.007G201600 - -
6 Sobic.002G084600 - -
7 Sobic.007G094050 - -
8 Sobic.005G081900 - -
9 Sobic.008G053900 citrate-binding protein precursor, putative, expressed -
10 Sobic.009G107600 inhibitor I family protein, putative, expressed -
11 Sobic.009G058200 - -
12 Sobic.010G060800 glutamate synthase, chloroplast precursor, putative, expressed -
13 Sobic.002G162450 - -
14 Sobic.008G003800 - -
15 Sobic.007G022000 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
16 Sobic.004G161501 - -
17 Sobic.007G163901 - -
18 Sobic.003G111200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PIII1 - Proteinase inhibitor II family protein precursor, expressed -
19 Sobic.009G152180 - -
20 Sobic.009G007200 expressed protein -


Gene co-expression network
sample Sobic006G225700 Sobic006G225700 Sobic006G241100 Sobic006G241100 Sobic006G225700--Sobic006G241100 Sobic006G222000 Sobic006G222000 Sobic006G225700--Sobic006G222000 Sobic004G227550 Sobic004G227550 Sobic006G225700--Sobic004G227550 Sobic007G201600 Sobic007G201600 Sobic006G225700--Sobic007G201600 Sobic002G084600 Sobic002G084600 Sobic006G225700--Sobic002G084600 Sobic007G094050 Sobic007G094050 Sobic006G225700--Sobic007G094050 Sobic005G081900 Sobic005G081900 Sobic006G225700--Sobic005G081900 Sobic008G053900 Sobic008G053900 Sobic006G225700--Sobic008G053900 Sobic006G241100--Sobic006G222000 Sobic006G241100--Sobic006G225700 Sobic006G241100--Sobic005G081900 Sobic006G241100--Sobic007G201600 Sobic007G022000 Sobic007G022000 Sobic006G241100--Sobic007G022000 Sobic002G162450 Sobic002G162450 Sobic006G241100--Sobic002G162450 Sobic010G060800 Sobic010G060800 Sobic006G241100--Sobic010G060800 Sobic006G241100--Sobic007G094050 Sobic002G027232 Sobic002G027232 Sobic006G241100--Sobic002G027232 Sobic006G222000--Sobic005G081900 Sobic006G222000--Sobic006G241100 Sobic006G222000--Sobic010G060800 Sobic006G222000--Sobic006G225700 Sobic006G222000--Sobic002G027232 Sobic006G222000--Sobic002G162450 Sobic003G180600 Sobic003G180600 Sobic006G222000--Sobic003G180600 Sobic008G003800 Sobic008G003800 Sobic006G222000--Sobic008G003800 Sobic005G157733 Sobic005G157733 Sobic006G222000--Sobic005G157733 Sobic004G227550--Sobic004G227550 Sobic004G227550--Sobic008G053900 Sobic004G227550--Sobic006G225700 Sobic009G107600 Sobic009G107600 Sobic004G227550--Sobic009G107600 Sobic009G152180 Sobic009G152180 Sobic004G227550--Sobic009G152180 Sobic004G227550--Sobic007G201600 Sobic004G227550--Sobic007G094050 Sobic004G227550--Sobic002G084600 Sobic009G058200 Sobic009G058200 Sobic004G227550--Sobic009G058200 Sobic007G201600--Sobic006G241100 Sobic007G201600--Sobic006G225700 Sobic007G201600--Sobic007G094050 Sobic007G201600--Sobic006G222000 Sobic007G201600--Sobic004G227550 Sobic007G201600--Sobic008G053900 Sobic007G201600--Sobic007G022000 Sobic007G201600--Sobic005G081900 Sobic002G084600--Sobic009G058200 Sobic002G084600--Sobic008G053900 Sobic002G084600--Sobic006G225700 Sobic007G163901 Sobic007G163901 Sobic002G084600--Sobic007G163901 Sobic003G111200 Sobic003G111200 Sobic002G084600--Sobic003G111200 Sobic002G084600--Sobic009G107600 Sobic008G028800 Sobic008G028800 Sobic002G084600--Sobic008G028800 Sobic005G169400 Sobic005G169400 Sobic002G084600--Sobic005G169400 Sobic002G084600--Sobic004G227550 Sobic007G094050--Sobic006G225700 Sobic007G094050--Sobic007G201600 Sobic007G094050--Sobic006G241100 Sobic007G094050--Sobic006G222000 Sobic007G094050--Sobic004G227550 Sobic007G094050--Sobic007G022000 Sobic007G094050--Sobic005G081900 Sobic007G094050--Sobic010G060800 Sobic005G081900--Sobic006G222000 Sobic005G081900--Sobic002G027232 Sobic005G081900--Sobic006G241100 Sobic005G081900--Sobic003G180600 Sobic008G029200 Sobic008G029200 Sobic005G081900--Sobic008G029200 Sobic005G081900--Sobic010G060800 Sobic005G081900--Sobic006G225700 Sobic009G007200 Sobic009G007200 Sobic005G081900--Sobic009G007200 Sobic005G077200 Sobic005G077200 Sobic005G081900--Sobic005G077200 Sobic008G053900--Sobic008G028800 Sobic008G053900--Sobic004G227550 Sobic008G053900--Sobic002G084600 Sobic008G053900--Sobic006G225700 Sobic008G053900--Sobic009G107600 Sobic008G053900--Sobic009G058200 Sobic008G053900--Sobic007G201600 Sobic008G053900--Sobic006G241100
Octagon: transcription factors


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