Gene annotation
Transcriptome id Sobic.007G000900.1,Sobic.007G000900.3,Sobic.007G000900.2
Synonym Sb07g000270
Functional annotation flap endonuclease, putative, expressed
UniProt C5YLC6 , A0A1Z5R7J5 , A0A1B6PEN6
Pfam PF00752 PF00867 PF00867
Panther DB PTHR11081 PTHR11081:SF17
NCBI CDD KOG2519; 5'-3' exonuclease
KEGG Orthology K15338; GEN1, flap endonuclease GEN
Gene Ontology GO:0006281; DNA repair GO:0004518nuclease activity GO:0004518nuclease activity GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT3G48900 : single-stranded DNA endonuclease family protein
RAP-DB (Rice) LOC_Os08g01130.1 : flap endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a040108
Brachypodium KQJ94747
Barley HORVU7Hr1G078710.6 , HORVU7Hr1G078710.7 , HORVU7Hr1G078710.5 , HORVU7Hr1G078710.2 , HORVU7Hr1G078710.3 , HORVU7Hr1G078710.1 , HORVU7Hr1G078710.8 , HORVU7Hr1G078710.9 , HORVU7Hr1G078710.15 , HORVU7Hr1G078710.16 , HORVU7Hr1G078710.10 , HORVU7Hr1G078710.11 , HORVU7Hr1G078710.12
Wheat TraesCS7D02G325700 , TraesCS7B02G229500 , TraesCS7A02G328800 , TraesCS7A02G328800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G251700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsHKT2@4 - Na+ transporter, expressed -
2 Sobic.004G112100 -(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsRhmbd6 - Putative Rhomboid homologue, expressed -
3 Sobic.005G231500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA-type ATPase family protein, putative, expressed -
4 Sobic.004G154200 expressed protein -
5 Sobic.004G027600 expressed protein -
6 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
7 Sobic.003G097600 - -
8 Sobic.001G132600 histidine acid phosphatase, putative, expressed K13024: PPIP5K, inositol-hexakisphosphate/diphosphoinositol-pentakisphosphate 1-kinase
9 Sobic.007G006400 - -
10 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
11 Sobic.009G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
12 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
13 Sobic.005G206400 - -
14 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
15 Sobic.006G153400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, AFG1 family domain containing protein, expressed -
16 Sobic.006G120500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
17 Sobic.006G057866 - K12129: pseudo-response regulator 7
18 Sobic.004G032400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-aspartate oxidase 1, putative, expressed K00278: L-aspartate oxidase
19 Sobic.007G142200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
20 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic007G000900 Sobic007G000900 Sobic010G251700 Sobic010G251700 Sobic007G000900--Sobic010G251700 Sobic004G112100 Sobic004G112100 Sobic007G000900--Sobic004G112100 Sobic005G231500 Sobic005G231500 Sobic007G000900--Sobic005G231500 Sobic004G154200 Sobic004G154200 Sobic007G000900--Sobic004G154200 Sobic004G027600 Sobic004G027600 Sobic007G000900--Sobic004G027600 Sobic005G206300 Sobic005G206300 Sobic007G000900--Sobic005G206300 Sobic003G097600 Sobic003G097600 Sobic007G000900--Sobic003G097600 Sobic001G132600 Sobic001G132600 Sobic007G000900--Sobic001G132600 Sobic007G006400 Sobic007G006400 Sobic007G000900--Sobic007G006400 Sobic010G251700--Sobic004G027600 Sobic010G251700--Sobic005G231500 Sobic010G251700--Sobic004G112100 Sobic004G356400 Sobic004G356400 Sobic010G251700--Sobic004G356400 Sobic001G446100 Sobic001G446100 Sobic010G251700--Sobic001G446100 Sobic004G189800 Sobic004G189800 Sobic010G251700--Sobic004G189800 Sobic003G021100 Sobic003G021100 Sobic010G251700--Sobic003G021100 Sobic001G329400 Sobic001G329400 Sobic010G251700--Sobic001G329400 Sobic007G142200 Sobic007G142200 Sobic010G251700--Sobic007G142200 Sobic006G153400 Sobic006G153400 Sobic004G112100--Sobic006G153400 Sobic009G048900 Sobic009G048900 Sobic004G112100--Sobic009G048900 Sobic010G104800 Sobic010G104800 Sobic004G112100--Sobic010G104800 Sobic004G215800 Sobic004G215800 Sobic004G112100--Sobic004G215800 Sobic009G256100 Sobic009G256100 Sobic004G112100--Sobic009G256100 Sobic004G112100--Sobic003G097600 Sobic002G404800 Sobic002G404800 Sobic004G112100--Sobic002G404800 Sobic004G112100--Sobic007G006400 Sobic004G112100--Sobic004G027600 Sobic003G367500 Sobic003G367500 Sobic005G231500--Sobic003G367500 Sobic005G231500--Sobic010G251700 Sobic005G231500--Sobic005G206300 Sobic005G231500--Sobic004G154200 Sobic007G105500 Sobic007G105500 Sobic005G231500--Sobic007G105500 Sobic005G231500--Sobic001G329400 Sobic001G134100 Sobic001G134100 Sobic005G231500--Sobic001G134100 Sobic005G231500--Sobic004G356400 Sobic005G231500--Sobic004G215800 Sobic004G154200--Sobic003G367500 Sobic003G185900 Sobic003G185900 Sobic004G154200--Sobic003G185900 Sobic003G398800 Sobic003G398800 Sobic004G154200--Sobic003G398800 Sobic004G154200--Sobic007G105500 Sobic010G067100 Sobic010G067100 Sobic004G154200--Sobic010G067100 Sobic004G154200--Sobic005G231500 Sobic010G085100 Sobic010G085100 Sobic004G154200--Sobic010G085100 Sobic003G127800 Sobic003G127800 Sobic004G154200--Sobic003G127800 Sobic004G154200--Sobic001G329400 Sobic004G027600--Sobic004G189800 Sobic004G027600--Sobic003G185900 Sobic004G027600--Sobic010G251700 Sobic004G027600--Sobic004G112100 Sobic009G237100 Sobic009G237100 Sobic004G027600--Sobic009G237100 Sobic004G027600--Sobic010G067100 Sobic004G027600--Sobic010G085100 Sobic001G258200 Sobic001G258200 Sobic004G027600--Sobic001G258200 Sobic005G101200 Sobic005G101200 Sobic004G027600--Sobic005G101200 Sobic005G206300--Sobic005G231500 Sobic005G206300--Sobic004G356400 Sobic001G017300 Sobic001G017300 Sobic005G206300--Sobic001G017300 Sobic003G391200 Sobic003G391200 Sobic005G206300--Sobic003G391200 Sobic005G206300--Sobic005G101200 Sobic009G015100 Sobic009G015100 Sobic005G206300--Sobic009G015100 Sobic005G206300--Sobic004G154200 Sobic010G249700 Sobic010G249700 Sobic005G206300--Sobic010G249700 Sobic003G313300 Sobic003G313300 Sobic005G206300--Sobic003G313300 Sobic008G129900 Sobic008G129900 Sobic003G097600--Sobic008G129900 Sobic003G097600--Sobic007G006400 Sobic003G097600--Sobic004G215800 Sobic003G097600--Sobic003G185900 Sobic008G033000 Sobic008G033000 Sobic003G097600--Sobic008G033000 Sobic003G097600--Sobic004G112100 Sobic004G082300 Sobic004G082300 Sobic003G097600--Sobic004G082300 Sobic009G038701 Sobic009G038701 Sobic003G097600--Sobic009G038701 Sobic003G097600--Sobic001G258200 Sobic004G151800 Sobic004G151800 Sobic001G132600--Sobic004G151800 Sobic001G132600--Sobic003G127800 Sobic004G059800 Sobic004G059800 Sobic001G132600--Sobic004G059800 Sobic001G132600--Sobic004G154200 Sobic001G132600--Sobic004G082300 Sobic001G132600--Sobic006G153400 Sobic001G132600--Sobic007G006400 Sobic009G129300 Sobic009G129300 Sobic001G132600--Sobic009G129300 Sobic001G132600--Sobic004G112100 Sobic007G006400--Sobic003G097600 Sobic007G006400--Sobic010G104800 Sobic007G006400--Sobic006G153400 Sobic007G006400--Sobic008G129900 Sobic007G006400--Sobic004G112100 Sobic007G006400--Sobic004G082300 Sobic007G006400--Sobic009G256100 Sobic007G006400--Sobic004G059800 Sobic007G006400--Sobic003G127800
Octagon: transcription factors


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