Gene annotation
Transcriptome id Sobic.008G041100.1
Synonym Sb08g003550
Functional annotation expressed protein
UniProt A0A1B6PBE2
Pfam PF02362
Panther DB PTHR31140 PTHR31140:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G11580 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os12g06080.1 : expressed protein
MaizeGDB (Corn) Zm00025a033527 , Zm00025a000289 , Zm00025a000286 , Zm00025a010076 , Zm00025a027935 , Zm00025a023512 , Zm00025a038878 , Zm00025a000291 , Zm00025a053927
Brachypodium KQJ89377 , KQK02620 , KQK09293 , KQJ92192
Barley HORVU5Hr1G040620.3 , HORVU5Hr1G040620.2 , HORVU5Hr1G040620.1 , HORVU5Hr1G040620.5 , HORVU5Hr1G040620.4 , HORVU4Hr1G021650.21 , HORVU4Hr1G021650.20 , HORVU4Hr1G021650.22 , HORVU1Hr1G082670.10 , HORVU4Hr1G074300.2 , HORVU4Hr1G074300.1 , HORVU4Hr1G074300.6 , HORVU4Hr1G074300.4 , HORVU3Hr1G010060.2 , HORVU3Hr1G010060.1 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU1Hr1G082670.1 , HORVU4Hr1G021650.7 , HORVU4Hr1G021650.8 , HORVU3Hr1G010140.5 , HORVU3Hr1G010140.4 , HORVU3Hr1G010140.1 , HORVU3Hr1G010140.3 , HORVU3Hr1G010140.2 , HORVU4Hr1G021650.18 , HORVU4Hr1G021650.19 , HORVU4Hr1G021650.14 , HORVU4Hr1G021650.15 , HORVU4Hr1G021650.16 , HORVU4Hr1G021650.17 , HORVU4Hr1G082090.3 , HORVU4Hr1G082090.2 , HORVU4Hr1G082090.1 , HORVU4Hr1G082090.4 , HORVU3Hr1G010100.1 , HORVU3Hr1G010100.2
Wheat TraesCS2D02G460900 , TraesCS4B02G117100 , TraesCS4D02G114900 , TraesCS5B02G126200 , TraesCS3D02G260100 , TraesCS5A02G127100 , TraesCS2A02G460700 , TraesCS2B02G482400 , TraesCS4A02G198300 , TraesCS4A02G198300 , TraesCS5D02G134700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126700 mitotic spindle checkpoint protein MAD2, putative, expressed K02537: mitotic spindle assembly checkpoint protein MAD2
2 Sobic.010G083050 - -
3 Sobic.003G145200 expressed protein -
4 Sobic.004G352700 methionine adenosyltransferase regulatory beta subunit-related, putative, expressed -
5 Sobic.002G302800 ATROPGEF7/ROPGEF7, putative, expressed -
6 Sobic.004G221100 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
7 Sobic.001G316500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.007G096833 - -
9 Sobic.001G536300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
10 Sobic.002G033200 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
11 Sobic.007G056300 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
12 Sobic.007G124800 MLA1, putative, expressed -
13 Sobic.006G103800 AGC_PVPK_like_CDK8.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.008G108000 expressed protein -
15 Sobic.001G265500 amidase, putative, expressed K01426: E3.5.1.4, amidase
16 Sobic.008G082700 WW domain containing protein, expressed -
17 Sobic.008G086300 - -
18 Sobic.004G045700 phytosulfokine receptor precursor, putative, expressed -
19 Sobic.008G007200 lectin-like receptor kinase, putative, expressed -
20 Sobic.010G059900 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -


Gene co-expression network
sample Sobic008G041100 Sobic008G041100 Sobic006G126700 Sobic006G126700 Sobic008G041100--Sobic006G126700 Sobic010G083050 Sobic010G083050 Sobic008G041100--Sobic010G083050 Sobic003G145200 Sobic003G145200 Sobic008G041100--Sobic003G145200 Sobic004G352700 Sobic004G352700 Sobic008G041100--Sobic004G352700 Sobic002G302800 Sobic002G302800 Sobic008G041100--Sobic002G302800 Sobic004G221100 Sobic004G221100 Sobic008G041100--Sobic004G221100 Sobic001G316500 Sobic001G316500 Sobic008G041100--Sobic001G316500 Sobic007G096833 Sobic007G096833 Sobic008G041100--Sobic007G096833 Sobic001G536300 Sobic001G536300 Sobic008G041100--Sobic001G536300 Sobic006G126700--Sobic008G041100 Sobic004G064700 Sobic004G064700 Sobic006G126700--Sobic004G064700 Sobic006G126700--Sobic002G302800 Sobic006G109000 Sobic006G109000 Sobic006G126700--Sobic006G109000 Sobic006G126700--Sobic004G352700 Sobic002G234800 Sobic002G234800 Sobic006G126700--Sobic002G234800 Sobic006G126700--Sobic004G221100 Sobic004G073800 Sobic004G073800 Sobic006G126700--Sobic004G073800 Sobic009G160100 Sobic009G160100 Sobic006G126700--Sobic009G160100 Sobic007G175000 Sobic007G175000 Sobic010G083050--Sobic007G175000 Sobic006G027800 Sobic006G027800 Sobic010G083050--Sobic006G027800 Sobic010G083050--Sobic004G221100 Sobic003G399200 Sobic003G399200 Sobic010G083050--Sobic003G399200 Sobic009G218450 Sobic009G218450 Sobic010G083050--Sobic009G218450 Sobic007G149950 Sobic007G149950 Sobic010G083050--Sobic007G149950 Sobic003G177350 Sobic003G177350 Sobic010G083050--Sobic003G177350 Sobic003G210500 Sobic003G210500 Sobic010G083050--Sobic003G210500 Sobic007G155950 Sobic007G155950 Sobic010G083050--Sobic007G155950 Sobic003G145200--Sobic001G536300 Sobic001G354900 Sobic001G354900 Sobic003G145200--Sobic001G354900 Sobic010G275600 Sobic010G275600 Sobic003G145200--Sobic010G275600 Sobic002G268200 Sobic002G268200 Sobic003G145200--Sobic002G268200 Sobic010G078800 Sobic010G078800 Sobic003G145200--Sobic010G078800 Sobic003G350000 Sobic003G350000 Sobic003G145200--Sobic003G350000 Sobic002G299800 Sobic002G299800 Sobic003G145200--Sobic002G299800 Sobic001G037550 Sobic001G037550 Sobic003G145200--Sobic001G037550 Sobic001G075900 Sobic001G075900 Sobic003G145200--Sobic001G075900 Sobic001G251500 Sobic001G251500 Sobic004G352700--Sobic001G251500 Sobic002G196900 Sobic002G196900 Sobic004G352700--Sobic002G196900 Sobic002G208900 Sobic002G208900 Sobic004G352700--Sobic002G208900 Sobic007G081400 Sobic007G081400 Sobic004G352700--Sobic007G081400 Sobic001G093732 Sobic001G093732 Sobic004G352700--Sobic001G093732 Sobic004G273500 Sobic004G273500 Sobic004G352700--Sobic004G273500 Sobic005G031100 Sobic005G031100 Sobic004G352700--Sobic005G031100 Sobic010G217001 Sobic010G217001 Sobic004G352700--Sobic010G217001 Sobic006G008500 Sobic006G008500 Sobic004G352700--Sobic006G008500 Sobic007G075600 Sobic007G075600 Sobic002G302800--Sobic007G075600 Sobic002G208700 Sobic002G208700 Sobic002G302800--Sobic002G208700 Sobic003G329300 Sobic003G329300 Sobic002G302800--Sobic003G329300 Sobic009G176100 Sobic009G176100 Sobic002G302800--Sobic009G176100 Sobic002G302800--Sobic007G096833 Sobic006G215650 Sobic006G215650 Sobic002G302800--Sobic006G215650 Sobic002G033200 Sobic002G033200 Sobic002G302800--Sobic002G033200 Sobic004G118300 Sobic004G118300 Sobic002G302800--Sobic004G118300 Sobic007G056300 Sobic007G056300 Sobic002G302800--Sobic007G056300 Sobic004G074400 Sobic004G074400 Sobic004G221100--Sobic004G074400 Sobic004G221100--Sobic002G208700 Sobic010G201444 Sobic010G201444 Sobic004G221100--Sobic010G201444 Sobic004G091300 Sobic004G091300 Sobic004G221100--Sobic004G091300 Sobic010G042300 Sobic010G042300 Sobic004G221100--Sobic010G042300 Sobic006G280250 Sobic006G280250 Sobic004G221100--Sobic006G280250 Sobic004G221100--Sobic007G075600 Sobic006G103800 Sobic006G103800 Sobic004G221100--Sobic006G103800 Sobic009G180900 Sobic009G180900 Sobic004G221100--Sobic009G180900 Sobic007G124800 Sobic007G124800 Sobic001G316500--Sobic007G124800 Sobic003G304900 Sobic003G304900 Sobic001G316500--Sobic003G304900 Sobic001G316500--Sobic010G217001 Sobic004G306700 Sobic004G306700 Sobic001G316500--Sobic004G306700 Sobic001G174300 Sobic001G174300 Sobic001G316500--Sobic001G174300 Sobic008G007200 Sobic008G007200 Sobic001G316500--Sobic008G007200 Sobic010G059900 Sobic010G059900 Sobic001G316500--Sobic010G059900 Sobic002G202200 Sobic002G202200 Sobic001G316500--Sobic002G202200 Sobic001G027400 Sobic001G027400 Sobic001G316500--Sobic001G027400 Sobic007G096833--Sobic009G176100 Sobic006G000200 Sobic006G000200 Sobic007G096833--Sobic006G000200 Sobic007G096833--Sobic003G399200 Sobic004G117850 Sobic004G117850 Sobic007G096833--Sobic004G117850 Sobic006G111000 Sobic006G111000 Sobic007G096833--Sobic006G111000 Sobic007G096833--Sobic002G302800 Sobic010G142501 Sobic010G142501 Sobic007G096833--Sobic010G142501 Sobic007G096833--Sobic007G056300 Sobic007G096833--Sobic004G118300 Sobic001G536300--Sobic003G145200 Sobic005G086700 Sobic005G086700 Sobic001G536300--Sobic005G086700 Sobic001G536300--Sobic001G354900 Sobic004G258800 Sobic004G258800 Sobic001G536300--Sobic004G258800 Sobic007G174000 Sobic007G174000 Sobic001G536300--Sobic007G174000 Sobic001G084300 Sobic001G084300 Sobic001G536300--Sobic001G084300 Sobic004G045700 Sobic004G045700 Sobic001G536300--Sobic004G045700 Sobic001G536300--Sobic010G275600 Sobic004G073700 Sobic004G073700 Sobic001G536300--Sobic004G073700
Octagon: transcription factors


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