Gene annotation
| Transcriptome id | Sobic.009G006600.1,Sobic.009G006600.2 |
|---|---|
| Synonym | Sb09g000800 |
| Functional annotation | auxin-induced protein 5NG4, putative, expressed |
| UniProt | C5YY35 , A0A1Z5R128 |
| Pfam | PF00892 |
| Panther DB | PTHR31218 PTHR31218:SF15 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane GO:0016020membrane |
Orthologs (automatic annotation)
| TAIR | AT5G64700 : nodulin MtN21 /EamA-like transporter family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g01570.1 : auxin-induced protein 5NG4, putative, expressed |
| MaizeGDB (Corn) | Zm00025a040972 |
| Brachypodium | - |
| Barley | HORVU3Hr1G079420.9 , HORVU3Hr1G079420.8 , HORVU3Hr1G079420.7 , HORVU3Hr1G079420.6 , HORVU3Hr1G079420.5 , HORVU3Hr1G079420.4 , HORVU3Hr1G079420.3 , HORVU3Hr1G079420.2 , HORVU3Hr1G079420.1 , HORVU3Hr1G079420.15 , HORVU3Hr1G079420.14 , HORVU3Hr1G079420.13 , HORVU3Hr1G079420.12 , HORVU3Hr1G079420.11 , HORVU3Hr1G079420.10 , HORVU1Hr1G022380.1 , HORVU1Hr1G022380.2 , HORVU1Hr1G022380.3 , HORVU1Hr1G022380.4 , HORVU1Hr1G022380.5 , HORVU1Hr1G022380.6 |
| Wheat | TraesCS3D02G328900 , TraesCS1A02G095600 , TraesCS6D02G045700 , TraesCS3A02G335900 , TraesCS3B02G366800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G203100 | similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 2 | Sobic.002G010100 | "may play a role as a meristem identity gene, as does AP1 in Arabidopsis"(PubMedID : 9065695)@OsMADS15 - MADS-box family gene with MIKCc type-box, expressed | K09264: MADS-box transcription factor, plant |
| 3 | Sobic.006G005700 | OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed | K09646: serine carboxypeptidase 1 |
| 4 | Sobic.009G048600 | - | - |
| 5 | Sobic.005G006000 | TMS membrane protein/tumour differentially expressed protein, putative, expressed | - |
| 6 | Sobic.009G031400 | AMP-binding enzyme, putative, expressed | K01897: ACSL, long-chain acyl-CoA synthetase |
| 7 | Sobic.008G156100 | ankyrin repeat domain-containing protein 44, putative, expressed | - |
| 8 | Sobic.002G028201 | - | K10523: speckle-type POZ protein |
| 9 | Sobic.006G281132 | - | - |
| 10 | Sobic.001G266600 | LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 11 | Sobic.001G282400 | WRKY2, expressed | - |
| 12 | Sobic.004G309700 | OsMan03 - Endo-Beta-Mannanase, expressed | K19355: mannan endo-1,4-beta-mannosidase |
| 13 | Sobic.006G184000 | cytochrome P450, putative, expressed | - |
| 14 | Sobic.003G098100 | aquaporin protein, putative, expressed | K09874: aquaporin NIP |
| 15 | Sobic.005G197200 | - | - |
| 16 | Sobic.007G162200 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 17 | Sobic.004G218700 | alcohol oxidase, putative, expressed | K17756: long-chain-alcohol oxidase |
| 18 | Sobic.009G146000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed | - |
| 19 | Sobic.003G367100 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 20 | Sobic.010G050500 | OsMADS5 - MADS-box family gene with MIKCc type-box, expressed | - |
Gene co-expression network
Octagon: transcription factors
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