Gene annotation
Transcriptome id Sobic.002G010100.1
Synonym SbMADS2, AGL7, MADS-domain transcription factor, Sb02g001090, AP1
Functional annotation "may play a role as a meristem identity gene, as does AP1 in Arabidopsis" (PubMedID : 9065695)
OsMADS15 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5X7A8 , O04068
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF218
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G69120 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os07g01820.3 : OsMADS15 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a037382 , Zm00025a016241 , Zm00025a001297 , Zm00025a026557 , Zm00025a037376 , Zm00025a053503 , Zm00025a000309 , Zm00025a052247 , Zm00025a016785 , Zm00025a037368 , Zm00025a044893 , Zm00025a049493
Brachypodium PNT65319 , KQK15335 , KQK15334 , KQK15336 , PNT65321 , KQK13150 , KQJ97593 , KQJ97594 , KQJ99121 , KQK21192 , KQK21191 , KQJ91889 , PNT65320 , KQK23920
Barley HORVU2Hr1G063800.11 , HORVU2Hr1G063800.10 , HORVU2Hr1G063800.9 , HORVU2Hr1G063800.8 , HORVU2Hr1G063800.7 , HORVU2Hr1G063800.6 , HORVU2Hr1G063800.5 , HORVU2Hr1G063800.4 , HORVU2Hr1G063800.2 , HORVU2Hr1G063800.3 , HORVU6Hr1G032220.8 , HORVU6Hr1G032220.1 , HORVU6Hr1G032220.3 , HORVU6Hr1G032220.2 , HORVU6Hr1G032220.4 , HORVU6Hr1G032220.7 , HORVU6Hr1G032220.6 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.4 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU6Hr1G032220.5 , HORVU1Hr1G047550.1 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU2Hr1G063800.1
Wheat TraesCS7A02G111800 , TraesCS6D02G147400 , TraesCS6A02G158100 , TraesCS2B02G281000 , TraesCS7B02G020800 , TraesCS7D02G120500 , TraesCS7D02G120600 , TraesCS2D02G262700 , TraesCS2D02G262700 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5B02G396600 , TraesCS2B02G200800 , TraesCS2A02G261200 , TraesCS2A02G261200 , TraesCS4B02G346700 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5A02G515500 , TraesCS4D02G341700 , TraesCS5B02G396600 , TraesCS6B02G186700 , TraesCS7A02G122000 , TraesCS7A02G111900 , TraesCS2A02G174300 , TraesCS2D02G181400
Populus -


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cDNA sequences
Sobic.002G010100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G106200 Homeobox domain containing protein, expressed -
2 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
3 Sobic.002G203100 similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.001G307200 exonuclease, putative, expressed -
5 Sobic.002G267800 expressed protein -
6 Sobic.003G040800 WRKY102, expressed -
7 Sobic.007G153001 - -
8 Sobic.009G006600 auxin-induced protein 5NG4, putative, expressed -
9 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
10 Sobic.001G145100 RIO1 family protein, expressed K08818: cell division cycle 2-like
11 Sobic.001G430700 expressed protein -
12 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
13 Sobic.009G253950 - -
14 Sobic.003G144200 Homeobox domain containing protein, expressed -
15 Sobic.002G023900 Homeobox domain containing protein, expressed -
16 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
17 Sobic.006G069200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
18 Sobic.005G060766 - -
19 Sobic.002G342100 no apical meristem protein, putative, expressed -
20 Sobic.008G149650 - -


Gene co-expression network
sample Sobic002G010100 Sobic002G010100 Sobic001G106200 Sobic001G106200 Sobic002G010100--Sobic001G106200 Sobic001G106000 Sobic001G106000 Sobic002G010100--Sobic001G106000 Sobic002G203100 Sobic002G203100 Sobic002G010100--Sobic002G203100 Sobic001G307200 Sobic001G307200 Sobic002G010100--Sobic001G307200 Sobic002G267800 Sobic002G267800 Sobic002G010100--Sobic002G267800 Sobic003G040800 Sobic003G040800 Sobic002G010100--Sobic003G040800 Sobic007G153001 Sobic007G153001 Sobic002G010100--Sobic007G153001 Sobic009G006600 Sobic009G006600 Sobic002G010100--Sobic009G006600 Sobic003G017200 Sobic003G017200 Sobic002G010100--Sobic003G017200 Sobic001G106200--Sobic001G106000 Sobic001G106200--Sobic002G010100 Sobic001G106200--Sobic003G040800 Sobic002G023900 Sobic002G023900 Sobic001G106200--Sobic002G023900 Sobic001G145100 Sobic001G145100 Sobic001G106200--Sobic001G145100 Sobic001G106200--Sobic002G267800 Sobic001G106200--Sobic007G153001 Sobic001G430700 Sobic001G430700 Sobic001G106200--Sobic001G430700 Sobic001G450800 Sobic001G450800 Sobic001G106200--Sobic001G450800 Sobic001G106000--Sobic003G040800 Sobic001G106000--Sobic003G017200 Sobic003G233900 Sobic003G233900 Sobic001G106000--Sobic003G233900 Sobic004G285100 Sobic004G285100 Sobic001G106000--Sobic004G285100 Sobic009G128300 Sobic009G128300 Sobic001G106000--Sobic009G128300 Sobic001G106000--Sobic002G023900 Sobic001G106000--Sobic001G430700 Sobic003G227600 Sobic003G227600 Sobic001G106000--Sobic003G227600 Sobic001G106000--Sobic007G153001 Sobic002G203100--Sobic002G010100 Sobic002G203100--Sobic009G006600 Sobic008G149650 Sobic008G149650 Sobic002G203100--Sobic008G149650 Sobic002G353100 Sobic002G353100 Sobic002G203100--Sobic002G353100 Sobic002G203100--Sobic001G106200 Sobic002G203100--Sobic002G267800 Sobic003G090650 Sobic003G090650 Sobic002G203100--Sobic003G090650 Sobic005G024100 Sobic005G024100 Sobic002G203100--Sobic005G024100 Sobic002G203100--Sobic001G307200 Sobic001G307200--Sobic001G430700 Sobic001G307200--Sobic001G106000 Sobic001G307200--Sobic001G450800 Sobic001G307200--Sobic003G040800 Sobic004G257350 Sobic004G257350 Sobic001G307200--Sobic004G257350 Sobic010G260300 Sobic010G260300 Sobic001G307200--Sobic010G260300 Sobic001G307200--Sobic002G267800 Sobic001G307200--Sobic004G285100 Sobic001G307200--Sobic003G233900 Sobic002G267800--Sobic001G430700 Sobic002G267800--Sobic001G106000 Sobic002G267800--Sobic003G040800 Sobic002G267800--Sobic001G450800 Sobic002G267800--Sobic001G106200 Sobic003G141800 Sobic003G141800 Sobic002G267800--Sobic003G141800 Sobic002G267800--Sobic001G307200 Sobic002G267800--Sobic004G285100 Sobic002G267800--Sobic003G017200 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic002G182800 Sobic002G182800 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic009G216900 Sobic009G216900 Sobic003G040800--Sobic009G216900 Sobic003G040800--Sobic004G285100 Sobic003G040800--Sobic003G017200 Sobic001G509400 Sobic001G509400 Sobic003G040800--Sobic001G509400 Sobic001G075101 Sobic001G075101 Sobic007G153001--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic007G153001--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic007G153001--Sobic003G083000 Sobic007G153001--Sobic002G023900 Sobic002G342100 Sobic002G342100 Sobic007G153001--Sobic002G342100 Sobic002G331450 Sobic002G331450 Sobic007G153001--Sobic002G331450 Sobic002G037400 Sobic002G037400 Sobic007G153001--Sobic002G037400 Sobic006G203000 Sobic006G203000 Sobic007G153001--Sobic006G203000 Sobic002G325600 Sobic002G325600 Sobic007G153001--Sobic002G325600 Sobic009G006600--Sobic002G203100 Sobic009G006600--Sobic002G010100 Sobic006G005700 Sobic006G005700 Sobic009G006600--Sobic006G005700 Sobic009G048600 Sobic009G048600 Sobic009G006600--Sobic009G048600 Sobic005G006000 Sobic005G006000 Sobic009G006600--Sobic005G006000 Sobic009G031400 Sobic009G031400 Sobic009G006600--Sobic009G031400 Sobic008G156100 Sobic008G156100 Sobic009G006600--Sobic008G156100 Sobic002G028201 Sobic002G028201 Sobic009G006600--Sobic002G028201 Sobic006G281132 Sobic006G281132 Sobic009G006600--Sobic006G281132 Sobic003G017200--Sobic001G106000 Sobic003G017200--Sobic003G040800 Sobic003G017200--Sobic002G342100 Sobic003G017200--Sobic007G153001 Sobic006G200200 Sobic006G200200 Sobic003G017200--Sobic006G200200 Sobic003G017200--Sobic009G128300 Sobic003G144200 Sobic003G144200 Sobic003G017200--Sobic003G144200 Sobic003G017200--Sobic003G083000 Sobic003G017200--Sobic002G182800
Octagon: transcription factors


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