Gene annotation
Transcriptome id Sobic.001G307200.2,Sobic.001G307200.1
Synonym Sb01g029940
Functional annotation exonuclease, putative, expressed
UniProt A0A1Z5S8E0 , C5WTF0
Pfam PF00929
Panther DB PTHR30231 PTHR30231:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07710 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os10g26720.1,LOC_Os10g26730.1 : exonuclease, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G020430.1 , HORVU5Hr1G020430.2 , HORVU5Hr1G020430.3 , HORVU5Hr1G020430.4 , HORVU5Hr1G020430.5 , HORVU5Hr1G020430.6 , HORVU5Hr1G020430.7
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G430700 expressed protein -
2 Sobic.001G106000 homeobox protein knotted-1, putative, expressed -
3 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
4 Sobic.003G040800 WRKY102, expressed -
5 Sobic.004G257350 - -
6 Sobic.010G260300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G267800 expressed protein -
8 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
9 Sobic.003G233900 - -
10 Sobic.004G155150 - -
11 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
12 Sobic.003G066900 expressed protein -
13 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
14 Sobic.009G253950 - -
15 Sobic.003G198150 - -
16 Sobic.002G013900 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
17 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
18 Sobic.009G128300 CUE domain containing protein, expressed -
19 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
20 Sobic.008G031300 nucleotidyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G307200 Sobic001G307200 Sobic001G430700 Sobic001G430700 Sobic001G307200--Sobic001G430700 Sobic001G106000 Sobic001G106000 Sobic001G307200--Sobic001G106000 Sobic001G450800 Sobic001G450800 Sobic001G307200--Sobic001G450800 Sobic003G040800 Sobic003G040800 Sobic001G307200--Sobic003G040800 Sobic004G257350 Sobic004G257350 Sobic001G307200--Sobic004G257350 Sobic010G260300 Sobic010G260300 Sobic001G307200--Sobic010G260300 Sobic002G267800 Sobic002G267800 Sobic001G307200--Sobic002G267800 Sobic004G285100 Sobic004G285100 Sobic001G307200--Sobic004G285100 Sobic003G233900 Sobic003G233900 Sobic001G307200--Sobic003G233900 Sobic001G430700--Sobic001G450800 Sobic003G361300 Sobic003G361300 Sobic001G430700--Sobic003G361300 Sobic001G430700--Sobic001G106000 Sobic001G430700--Sobic003G040800 Sobic001G430700--Sobic004G285100 Sobic001G430700--Sobic003G233900 Sobic001G430700--Sobic002G267800 Sobic003G141800 Sobic003G141800 Sobic001G430700--Sobic003G141800 Sobic009G000700 Sobic009G000700 Sobic001G430700--Sobic009G000700 Sobic001G106000--Sobic003G040800 Sobic003G017200 Sobic003G017200 Sobic001G106000--Sobic003G017200 Sobic001G106000--Sobic003G233900 Sobic001G106000--Sobic004G285100 Sobic009G128300 Sobic009G128300 Sobic001G106000--Sobic009G128300 Sobic002G023900 Sobic002G023900 Sobic001G106000--Sobic002G023900 Sobic001G106000--Sobic001G430700 Sobic003G227600 Sobic003G227600 Sobic001G106000--Sobic003G227600 Sobic007G153001 Sobic007G153001 Sobic001G106000--Sobic007G153001 Sobic001G450800--Sobic003G361300 Sobic001G450800--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic001G450800--Sobic003G198150 Sobic001G450800--Sobic001G106000 Sobic001G450800--Sobic003G040800 Sobic001G450800--Sobic003G227600 Sobic008G044750 Sobic008G044750 Sobic001G450800--Sobic008G044750 Sobic009G216900 Sobic009G216900 Sobic001G450800--Sobic009G216900 Sobic001G450800--Sobic004G285100 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic002G182800 Sobic002G182800 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic003G040800--Sobic009G216900 Sobic003G040800--Sobic004G285100 Sobic003G040800--Sobic003G017200 Sobic001G509400 Sobic001G509400 Sobic003G040800--Sobic001G509400 Sobic004G257350--Sobic003G233900 Sobic004G310600 Sobic004G310600 Sobic004G257350--Sobic004G310600 Sobic004G257350--Sobic009G000700 Sobic004G155150 Sobic004G155150 Sobic004G257350--Sobic004G155150 Sobic004G257350--Sobic003G040800 Sobic004G257350--Sobic003G227600 Sobic004G257350--Sobic009G128300 Sobic003G066900 Sobic003G066900 Sobic004G257350--Sobic003G066900 Sobic003G078501 Sobic003G078501 Sobic004G257350--Sobic003G078501 Sobic002G189000 Sobic002G189000 Sobic010G260300--Sobic002G189000 Sobic003G229000 Sobic003G229000 Sobic010G260300--Sobic003G229000 Sobic009G183000 Sobic009G183000 Sobic010G260300--Sobic009G183000 Sobic007G025800 Sobic007G025800 Sobic010G260300--Sobic007G025800 Sobic002G271100 Sobic002G271100 Sobic010G260300--Sobic002G271100 Sobic003G225900 Sobic003G225900 Sobic010G260300--Sobic003G225900 Sobic010G260300--Sobic004G155150 Sobic010G260300--Sobic003G233900 Sobic010G260300--Sobic003G198150 Sobic002G267800--Sobic001G430700 Sobic002G267800--Sobic001G106000 Sobic002G267800--Sobic003G040800 Sobic002G267800--Sobic001G450800 Sobic001G106200 Sobic001G106200 Sobic002G267800--Sobic001G106200 Sobic002G267800--Sobic003G141800 Sobic002G267800--Sobic001G307200 Sobic002G267800--Sobic004G285100 Sobic002G267800--Sobic003G017200 Sobic004G285100--Sobic003G233900 Sobic004G285100--Sobic003G040800 Sobic004G285100--Sobic004G310600 Sobic004G285100--Sobic009G000700 Sobic004G285100--Sobic001G106000 Sobic005G087800 Sobic005G087800 Sobic004G285100--Sobic005G087800 Sobic004G285100--Sobic009G128300 Sobic004G285100--Sobic003G227600 Sobic004G285100--Sobic004G155150 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic003G233900--Sobic009G216900 Sobic003G233900--Sobic004G257350 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100
Octagon: transcription factors


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