Gene annotation
Transcriptome id Sobic.009G045400.1,Sobic.009G045400.2,Sobic.009G045400.3,Sobic.009G045400.5,Sobic.009G045400.4
Synonym RECQSIM, Sb09g003880
Functional annotation -
UniProt A0A1Z5R0Z7 , A0A1Z5R1W6 , A0A1Z5R1J8 , C5Z048 , A0A1Z5R0U2
Pfam PF16124 PF00270 PF00271
Panther DB PTHR13710 PTHR13710:SF69
NCBI CDD KOG0352; ATP-dependent DNA helicase KOG0330ATP-dependent RNA helicase
KEGG Orthology K10900; WRN, werner syndrome ATP-dependent helicase
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G27680 : RECQ helicase SIM
RAP-DB (Rice) LOC_Os05g05810.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a038073
Brachypodium PNT71803 , PNT71802 , KQK07482 , KQK07483
Barley HORVU1Hr1G021560.28 , HORVU1Hr1G021560.29 , HORVU1Hr1G021560.20 , HORVU1Hr1G021560.21 , HORVU1Hr1G021560.22 , HORVU1Hr1G021560.24 , HORVU1Hr1G021560.25 , HORVU1Hr1G021560.26 , HORVU1Hr1G021560.27 , HORVU1Hr1G021560.23 , HORVU1Hr1G021560.9 , HORVU1Hr1G021560.8 , HORVU1Hr1G021560.1 , HORVU1Hr1G021560.3 , HORVU1Hr1G021560.2 , HORVU1Hr1G021560.5 , HORVU1Hr1G021560.4 , HORVU1Hr1G021560.7 , HORVU1Hr1G021560.6 , HORVU1Hr1G021560.19 , HORVU1Hr1G021560.18 , HORVU1Hr1G021560.15 , HORVU1Hr1G021560.14 , HORVU1Hr1G021560.17 , HORVU1Hr1G021560.16 , HORVU1Hr1G021560.11 , HORVU1Hr1G021560.10 , HORVU1Hr1G021560.13 , HORVU1Hr1G021560.12 , HORVU1Hr1G021560.39 , HORVU1Hr1G021560.38 , HORVU1Hr1G021560.33 , HORVU1Hr1G021560.32 , HORVU1Hr1G021560.31 , HORVU1Hr1G021560.30 , HORVU1Hr1G021560.37 , HORVU1Hr1G021560.36 , HORVU1Hr1G021560.35 , HORVU1Hr1G021560.34
Wheat TraesCS1A02G091400 , TraesCS1A02G091400 , TraesCS1D02G100000 , TraesCS1D02G100000 , TraesCS1D02G100000 , TraesCS1B02G119200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G025750 - -
2 Sobic.002G094100 kinesin motor domain containing protein, putative, expressed -
3 Sobic.007G020400 OsWAK112d - OsWAK receptor-like protein kinase, expressed -
4 Sobic.001G443400 conserved hypothetical protein -
5 Sobic.010G266400 - -
6 Sobic.010G033750 - -
7 Sobic.006G174050 - K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.003G142500 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
9 Sobic.002G094000 expressed protein -
10 Sobic.010G259800 - -
11 Sobic.010G166201 - -
12 Sobic.008G081100 - -
13 Sobic.010G229025 - -
14 Sobic.006G083050 - -
15 Sobic.006G250350 - -
16 Sobic.007G050650 - -
17 Sobic.003G357900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@strictosidine synthase, putative, expressed -
18 Sobic.001G516400 - -
19 Sobic.003G205000 DUF623 domain containing protein, expressed -
20 Sobic.006G113301 - -


Gene co-expression network
sample Sobic009G045400 Sobic009G045400 Sobic009G025750 Sobic009G025750 Sobic009G045400--Sobic009G025750 Sobic002G094100 Sobic002G094100 Sobic009G045400--Sobic002G094100 Sobic007G020400 Sobic007G020400 Sobic009G045400--Sobic007G020400 Sobic001G443400 Sobic001G443400 Sobic009G045400--Sobic001G443400 Sobic010G266400 Sobic010G266400 Sobic009G045400--Sobic010G266400 Sobic010G033750 Sobic010G033750 Sobic009G045400--Sobic010G033750 Sobic006G174050 Sobic006G174050 Sobic009G045400--Sobic006G174050 Sobic003G142500 Sobic003G142500 Sobic009G045400--Sobic003G142500 Sobic002G094000 Sobic002G094000 Sobic009G045400--Sobic002G094000 Sobic001G050650 Sobic001G050650 Sobic009G025750--Sobic001G050650 Sobic007G045750 Sobic007G045750 Sobic009G025750--Sobic007G045750 Sobic010G166201 Sobic010G166201 Sobic009G025750--Sobic010G166201 Sobic002G073000 Sobic002G073000 Sobic009G025750--Sobic002G073000 Sobic009G025750--Sobic003G142500 Sobic006G083050 Sobic006G083050 Sobic009G025750--Sobic006G083050 Sobic009G025750--Sobic002G094100 Sobic010G259800 Sobic010G259800 Sobic009G025750--Sobic010G259800 Sobic009G025750--Sobic002G094000 Sobic002G094100--Sobic002G094000 Sobic002G094100--Sobic002G073000 Sobic002G094100--Sobic001G443400 Sobic002G094100--Sobic003G142500 Sobic005G024500 Sobic005G024500 Sobic002G094100--Sobic005G024500 Sobic004G278800 Sobic004G278800 Sobic002G094100--Sobic004G278800 Sobic002G094100--Sobic010G166201 Sobic002G334700 Sobic002G334700 Sobic002G094100--Sobic002G334700 Sobic005G019300 Sobic005G019300 Sobic002G094100--Sobic005G019300 Sobic010G064300 Sobic010G064300 Sobic007G020400--Sobic010G064300 Sobic005G192350 Sobic005G192350 Sobic007G020400--Sobic005G192350 Sobic007G020400--Sobic010G266400 Sobic007G050650 Sobic007G050650 Sobic007G020400--Sobic007G050650 Sobic007G020400--Sobic009G045400 Sobic008G081100 Sobic008G081100 Sobic007G020400--Sobic008G081100 Sobic007G020400--Sobic001G443400 Sobic003G148950 Sobic003G148950 Sobic007G020400--Sobic003G148950 Sobic006G113301 Sobic006G113301 Sobic007G020400--Sobic006G113301 Sobic001G443400--Sobic008G081100 Sobic001G443400--Sobic002G094100 Sobic001G443400--Sobic010G166201 Sobic001G443400--Sobic010G259800 Sobic006G250350 Sobic006G250350 Sobic001G443400--Sobic006G250350 Sobic008G174200 Sobic008G174200 Sobic001G443400--Sobic008G174200 Sobic001G443400--Sobic010G266400 Sobic001G443400--Sobic002G073000 Sobic001G443400--Sobic005G192350 Sobic010G266400--Sobic007G050650 Sobic002G199300 Sobic002G199300 Sobic010G266400--Sobic002G199300 Sobic010G266400--Sobic001G443400 Sobic010G266400--Sobic005G192350 Sobic003G205000 Sobic003G205000 Sobic010G266400--Sobic003G205000 Sobic010G266400--Sobic006G174050 Sobic010G266400--Sobic007G020400 Sobic010G266400--Sobic002G334700 Sobic010G266400--Sobic010G064300 Sobic010G033750--Sobic004G278800 Sobic003G059450 Sobic003G059450 Sobic010G033750--Sobic003G059450 Sobic010G033750--Sobic008G174200 Sobic010G033750--Sobic002G094000 Sobic001G422001 Sobic001G422001 Sobic010G033750--Sobic001G422001 Sobic010G033750--Sobic002G094100 Sobic008G138850 Sobic008G138850 Sobic010G033750--Sobic008G138850 Sobic009G078401 Sobic009G078401 Sobic010G033750--Sobic009G078401 Sobic010G033750--Sobic001G443400 Sobic009G170050 Sobic009G170050 Sobic006G174050--Sobic009G170050 Sobic006G174050--Sobic003G205000 Sobic009G158150 Sobic009G158150 Sobic006G174050--Sobic009G158150 Sobic006G174050--Sobic010G266400 Sobic006G174050--Sobic010G166201 Sobic005G168900 Sobic005G168900 Sobic006G174050--Sobic005G168900 Sobic001G516400 Sobic001G516400 Sobic006G174050--Sobic001G516400 Sobic006G174050--Sobic002G199300 Sobic002G178900 Sobic002G178900 Sobic006G174050--Sobic002G178900 Sobic003G142500--Sobic002G094000 Sobic003G142500--Sobic002G094100 Sobic009G213150 Sobic009G213150 Sobic003G142500--Sobic009G213150 Sobic003G142500--Sobic002G073000 Sobic003G142500--Sobic009G025750 Sobic003G142500--Sobic005G024500 Sobic003G142500--Sobic004G278800 Sobic005G187700 Sobic005G187700 Sobic003G142500--Sobic005G187700 Sobic003G142500--Sobic005G019300 Sobic002G094000--Sobic005G024500 Sobic002G094000--Sobic005G019300 Sobic002G094000--Sobic002G073000 Sobic002G094000--Sobic002G094100 Sobic002G094000--Sobic003G142500 Sobic006G094900 Sobic006G094900 Sobic002G094000--Sobic006G094900 Sobic002G094000--Sobic009G213150 Sobic002G094000--Sobic004G278800 Sobic004G334501 Sobic004G334501 Sobic002G094000--Sobic004G334501
Octagon: transcription factors


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