Gene annotation
Transcriptome id Sobic.010G008300.1,Sobic.010G008300.2,Sobic.010G008300.3
Synonym VDD, Sb10g000950
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A194YGP2 , C5Z2Q1
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G18000 : VERDANDI
RAP-DB (Rice) LOC_Os06g02230.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G178550 - -
2 Sobic.005G203700 - -
3 Sobic.009G197100 O-methyltransferase, putative, expressed -
4 Sobic.007G212900 ZOS8-10 - C2H2 zinc finger protein, expressed -
5 Sobic.001G539300 expressed protein -
6 Sobic.001G539300 expressed protein -
7 Sobic.001G539300 expressed protein -
8 Sobic.001G539300 expressed protein -
9 Sobic.001G539300 expressed protein -
10 Sobic.001G539300 expressed protein -
11 Sobic.010G156400 expressed protein -
12 Sobic.008G184700 CND41, chloroplast nucleoid DNA binding protein, putative, expressed -
13 Sobic.005G011900 - -
14 Sobic.004G292600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.001G414300 - -
16 Sobic.001G246900 MBTB45 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.008G026000 expressed protein -
18 Sobic.009G197400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@O-methyltransferase family 2 protein (Zm)(PubMedID : 27208977)@O-methyltransferase family protein("PubMedID : 26759170,PubMedID : 24597475")@O-methyltransferase, putative, expressed -
19 Sobic.001G162233 - -
20 Sobic.006G198000 expressed protein -


Gene co-expression network
sample Sobic010G008300 Sobic010G008300 Sobic009G178550 Sobic009G178550 Sobic010G008300--Sobic009G178550 Sobic005G203700 Sobic005G203700 Sobic010G008300--Sobic005G203700 Sobic009G197100 Sobic009G197100 Sobic010G008300--Sobic009G197100 Sobic007G212900 Sobic007G212900 Sobic010G008300--Sobic007G212900 Sobic001G539300 Sobic001G539300 Sobic010G008300--Sobic001G539300 Sobic009G178550--Sobic001G539300 Sobic009G178550--Sobic005G203700 Sobic010G156400 Sobic010G156400 Sobic009G178550--Sobic010G156400 Sobic008G184700 Sobic008G184700 Sobic009G178550--Sobic008G184700 Sobic005G203700--Sobic009G178550 Sobic005G203700--Sobic001G539300 Sobic005G203700--Sobic010G156400 Sobic005G011900 Sobic005G011900 Sobic005G203700--Sobic005G011900 Sobic006G198000 Sobic006G198000 Sobic009G197100--Sobic006G198000 Sobic008G026000 Sobic008G026000 Sobic009G197100--Sobic008G026000 Sobic004G292600 Sobic004G292600 Sobic009G197100--Sobic004G292600 Sobic008G036800 Sobic008G036800 Sobic009G197100--Sobic008G036800 Sobic002G044600 Sobic002G044600 Sobic009G197100--Sobic002G044600 Sobic001G162233 Sobic001G162233 Sobic009G197100--Sobic001G162233 Sobic009G197100--Sobic001G539300 Sobic007G212900--Sobic010G008300 Sobic004G298500 Sobic004G298500 Sobic007G212900--Sobic004G298500 Sobic006G171200 Sobic006G171200 Sobic007G212900--Sobic006G171200 Sobic010G044500 Sobic010G044500 Sobic007G212900--Sobic010G044500 Sobic001G140400 Sobic001G140400 Sobic007G212900--Sobic001G140400 Sobic006G195400 Sobic006G195400 Sobic007G212900--Sobic006G195400 Sobic003G176200 Sobic003G176200 Sobic007G212900--Sobic003G176200 Sobic007G090436 Sobic007G090436 Sobic007G212900--Sobic007G090436 Sobic005G228100 Sobic005G228100 Sobic007G212900--Sobic005G228100 Sobic001G539300--Sobic001G539300 Sobic001G539300--Sobic010G156400 Sobic001G539300--Sobic009G178550 Sobic001G539300--Sobic008G184700 Sobic001G539300--Sobic004G292600
Octagon: transcription factors


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