Gene annotation
Transcriptome id Sobic.010G052000.1
Synonym Sb10g004510
Functional annotation OsFBDUF30 - F-box and DUF domain containing protein, expressed
UniProt A0A194YIG0
Pfam PF03478
Panther DB PTHR33110 PTHR33110:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g05580.1 : OsFBDUF30 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G266600 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.007G162200 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.010G195800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamoyl-CoA reductase family (At)(PubMedID : 27208977)@reductase, putative, expressed -
4 Sobic.009G048600 - -
5 Sobic.002G332300 expressed protein -
6 Sobic.004G125400 isochorismatase family protein, putative, expressed -
7 Sobic.008G087300 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
8 Sobic.004G167000 POEI29 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed -
9 Sobic.008G008200 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
10 Sobic.010G232000 RIC10, putative, expressed -
11 Sobic.005G006000 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
12 Sobic.009G239800 DUF538 domain containing protein, putative, expressed -
13 Sobic.006G005700 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
14 Sobic.001G266900 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.007G068700 polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
16 Sobic.008G156100 ankyrin repeat domain-containing protein 44, putative, expressed -
17 Sobic.002G028201 - K10523: speckle-type POZ protein
18 Sobic.006G281132 - -
19 Sobic.010G180000 - -
20 Sobic.005G110538 - K08818: cell division cycle 2-like


Gene co-expression network
sample Sobic010G052000 Sobic010G052000 Sobic001G266600 Sobic001G266600 Sobic010G052000--Sobic001G266600 Sobic007G162200 Sobic007G162200 Sobic010G052000--Sobic007G162200 Sobic010G195800 Sobic010G195800 Sobic010G052000--Sobic010G195800 Sobic009G048600 Sobic009G048600 Sobic010G052000--Sobic009G048600 Sobic002G332300 Sobic002G332300 Sobic010G052000--Sobic002G332300 Sobic004G125400 Sobic004G125400 Sobic010G052000--Sobic004G125400 Sobic008G087300 Sobic008G087300 Sobic010G052000--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic010G052000--Sobic004G167000 Sobic008G008200 Sobic008G008200 Sobic010G052000--Sobic008G008200 Sobic001G266600--Sobic009G048600 Sobic001G266600--Sobic007G162200 Sobic005G006000 Sobic005G006000 Sobic001G266600--Sobic005G006000 Sobic001G266600--Sobic010G195800 Sobic006G005700 Sobic006G005700 Sobic001G266600--Sobic006G005700 Sobic008G156100 Sobic008G156100 Sobic001G266600--Sobic008G156100 Sobic002G028201 Sobic002G028201 Sobic001G266600--Sobic002G028201 Sobic006G281132 Sobic006G281132 Sobic001G266600--Sobic006G281132 Sobic009G146000 Sobic009G146000 Sobic001G266600--Sobic009G146000 Sobic007G162200--Sobic001G266600 Sobic007G162200--Sobic010G195800 Sobic007G162200--Sobic009G048600 Sobic007G162200--Sobic008G087300 Sobic007G162200--Sobic005G006000 Sobic007G162200--Sobic006G005700 Sobic007G162200--Sobic008G008200 Sobic007G162200--Sobic004G167000 Sobic009G239800 Sobic009G239800 Sobic007G162200--Sobic009G239800 Sobic010G195800--Sobic007G162200 Sobic010G195800--Sobic001G266600 Sobic010G195800--Sobic009G048600 Sobic010G195800--Sobic008G008200 Sobic010G195800--Sobic008G087300 Sobic007G068700 Sobic007G068700 Sobic010G195800--Sobic007G068700 Sobic010G195800--Sobic004G167000 Sobic010G195800--Sobic009G239800 Sobic005G110538 Sobic005G110538 Sobic010G195800--Sobic005G110538 Sobic009G048600--Sobic001G266600 Sobic009G048600--Sobic005G006000 Sobic009G048600--Sobic008G156100 Sobic009G048600--Sobic002G028201 Sobic009G048600--Sobic006G281132 Sobic009G048600--Sobic006G005700 Sobic009G048600--Sobic007G162200 Sobic009G048600--Sobic009G146000 Sobic009G048600--Sobic010G195800 Sobic002G332300--Sobic008G087300 Sobic002G332300--Sobic004G167000 Sobic001G238600 Sobic001G238600 Sobic002G332300--Sobic001G238600 Sobic010G180000 Sobic010G180000 Sobic002G332300--Sobic010G180000 Sobic007G175400 Sobic007G175400 Sobic002G332300--Sobic007G175400 Sobic002G332300--Sobic008G008200 Sobic008G126000 Sobic008G126000 Sobic002G332300--Sobic008G126000 Sobic001G266900 Sobic001G266900 Sobic002G332300--Sobic001G266900 Sobic002G332300--Sobic009G239800 Sobic008G010400 Sobic008G010400 Sobic004G125400--Sobic008G010400 Sobic001G422300 Sobic001G422300 Sobic004G125400--Sobic001G422300 Sobic006G066500 Sobic006G066500 Sobic004G125400--Sobic006G066500 Sobic004G125400--Sobic002G332300 Sobic010G232000 Sobic010G232000 Sobic004G125400--Sobic010G232000 Sobic004G125400--Sobic001G238600 Sobic005G011100 Sobic005G011100 Sobic004G125400--Sobic005G011100 Sobic003G112200 Sobic003G112200 Sobic004G125400--Sobic003G112200 Sobic006G226200 Sobic006G226200 Sobic004G125400--Sobic006G226200 Sobic008G087300--Sobic004G167000 Sobic008G087300--Sobic001G266900 Sobic008G087300--Sobic008G008200 Sobic008G087300--Sobic010G180000 Sobic008G138300 Sobic008G138300 Sobic008G087300--Sobic008G138300 Sobic010G159500 Sobic010G159500 Sobic008G087300--Sobic010G159500 Sobic008G087300--Sobic009G239800 Sobic003G239400 Sobic003G239400 Sobic008G087300--Sobic003G239400 Sobic008G087300--Sobic008G126000 Sobic004G167000--Sobic008G087300 Sobic004G167000--Sobic001G266900 Sobic004G167000--Sobic008G008200 Sobic004G167000--Sobic010G180000 Sobic004G167000--Sobic008G138300 Sobic004G167000--Sobic010G159500 Sobic007G064600 Sobic007G064600 Sobic004G167000--Sobic007G064600 Sobic004G167000--Sobic003G239400 Sobic003G040400 Sobic003G040400 Sobic004G167000--Sobic003G040400 Sobic008G008200--Sobic008G087300 Sobic008G008200--Sobic004G167000 Sobic008G008200--Sobic010G180000 Sobic008G008200--Sobic001G266900 Sobic008G008200--Sobic009G239800 Sobic008G008200--Sobic007G068700 Sobic008G008200--Sobic008G138300 Sobic003G162500 Sobic003G162500 Sobic008G008200--Sobic003G162500 Sobic008G008200--Sobic010G159500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.