Gene annotation
Transcriptome id Sobic.010G097100.1
Synonym Sb10g008460
Functional annotation XPA-binding protein 2, putative, expressed
UniProt C5Z7G6
Pfam -
Panther DB PTHR11246 PTHR11246:SF15
NCBI CDD -
KEGG Orthology K12867; SYF1, pre-mRNA-splicing factor SYF1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28740 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g12910.1 : XPA-binding protein 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU7Hr1G039410.2 , HORVU7Hr1G039410.1
Wheat TraesCS7B02G098000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G052500 receptor-like kinase, putative, expressed -
2 Sobic.010G054500 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
3 Sobic.010G253500 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
4 Sobic.005G158000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
5 Sobic.002G023900 Homeobox domain containing protein, expressed -
6 Sobic.007G073750 - -
7 Sobic.009G076700 expressed protein -
8 Sobic.001G278600 - -
9 Sobic.009G076500 expressed protein -
10 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
11 Sobic.005G016900 CRP11 - Cysteine-rich family protein precursor, expressed -
12 Sobic.007G143200 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
13 Sobic.003G351150 - -
14 Sobic.001G164100 cytochrome P450, putative, expressed -
15 Sobic.001G210250 - -
16 Sobic.003G397400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
17 Sobic.004G120200 expressed protein -
18 Sobic.001G210200 RIPER9 - Ripening-related family protein precursor, putative, expressed -
19 Sobic.001G210200 RIPER9 - Ripening-related family protein precursor, putative, expressed -
20 Sobic.001G210200 RIPER9 - Ripening-related family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic010G097100 Sobic010G097100 Sobic008G052500 Sobic008G052500 Sobic010G097100--Sobic008G052500 Sobic010G054500 Sobic010G054500 Sobic010G097100--Sobic010G054500 Sobic010G253500 Sobic010G253500 Sobic010G097100--Sobic010G253500 Sobic005G158000 Sobic005G158000 Sobic010G097100--Sobic005G158000 Sobic002G023900 Sobic002G023900 Sobic010G097100--Sobic002G023900 Sobic007G073750 Sobic007G073750 Sobic010G097100--Sobic007G073750 Sobic009G076700 Sobic009G076700 Sobic010G097100--Sobic009G076700 Sobic001G278600 Sobic001G278600 Sobic010G097100--Sobic001G278600 Sobic009G076500 Sobic009G076500 Sobic010G097100--Sobic009G076500 Sobic008G052500--Sobic010G054500 Sobic001G140200 Sobic001G140200 Sobic008G052500--Sobic001G140200 Sobic002G325600 Sobic002G325600 Sobic008G052500--Sobic002G325600 Sobic005G016900 Sobic005G016900 Sobic008G052500--Sobic005G016900 Sobic007G143100 Sobic007G143100 Sobic008G052500--Sobic007G143100 Sobic001G509400 Sobic001G509400 Sobic008G052500--Sobic001G509400 Sobic007G169600 Sobic007G169600 Sobic008G052500--Sobic007G169600 Sobic001G075101 Sobic001G075101 Sobic008G052500--Sobic001G075101 Sobic007G143200 Sobic007G143200 Sobic008G052500--Sobic007G143200 Sobic010G054500--Sobic008G052500 Sobic010G054500--Sobic001G140200 Sobic010G054500--Sobic005G016900 Sobic010G054500--Sobic007G143100 Sobic010G054500--Sobic007G073750 Sobic010G054500--Sobic007G143200 Sobic010G054500--Sobic009G076700 Sobic010G054500--Sobic007G169600 Sobic010G054500--Sobic002G325600 Sobic001G210250 Sobic001G210250 Sobic010G253500--Sobic001G210250 Sobic001G164100 Sobic001G164100 Sobic010G253500--Sobic001G164100 Sobic001G210200 Sobic001G210200 Sobic010G253500--Sobic001G210200 Sobic005G158000--Sobic001G164100 Sobic005G158000--Sobic010G253500 Sobic005G158000--Sobic001G210200 Sobic002G023900--Sobic001G075101 Sobic006G203000 Sobic006G203000 Sobic002G023900--Sobic006G203000 Sobic007G153001 Sobic007G153001 Sobic002G023900--Sobic007G153001 Sobic002G037400 Sobic002G037400 Sobic002G023900--Sobic002G037400 Sobic002G023900--Sobic007G169600 Sobic003G083000 Sobic003G083000 Sobic002G023900--Sobic003G083000 Sobic002G331450 Sobic002G331450 Sobic002G023900--Sobic002G331450 Sobic003G040800 Sobic003G040800 Sobic002G023900--Sobic003G040800 Sobic001G106000 Sobic001G106000 Sobic002G023900--Sobic001G106000 Sobic007G073750--Sobic005G016900 Sobic007G073750--Sobic007G143100 Sobic007G073750--Sobic007G143200 Sobic007G073750--Sobic009G076700 Sobic003G397400 Sobic003G397400 Sobic007G073750--Sobic003G397400 Sobic007G073750--Sobic010G253500 Sobic007G073750--Sobic007G169600 Sobic007G073750--Sobic003G083000 Sobic007G073750--Sobic001G210250 Sobic009G076700--Sobic007G143100 Sobic009G076700--Sobic007G073750 Sobic009G076700--Sobic005G016900 Sobic009G076700--Sobic007G143200 Sobic009G076700--Sobic003G397400 Sobic009G076700--Sobic007G169600 Sobic009G076700--Sobic002G037400 Sobic009G076700--Sobic003G083000 Sobic009G076700--Sobic010G253500 Sobic008G065400 Sobic008G065400 Sobic001G278600--Sobic008G065400 Sobic010G101700 Sobic010G101700 Sobic001G278600--Sobic010G101700 Sobic003G266700 Sobic003G266700 Sobic001G278600--Sobic003G266700 Sobic003G374500 Sobic003G374500 Sobic001G278600--Sobic003G374500 Sobic003G366850 Sobic003G366850 Sobic001G278600--Sobic003G366850 Sobic009G159300 Sobic009G159300 Sobic001G278600--Sobic009G159300 Sobic004G121000 Sobic004G121000 Sobic001G278600--Sobic004G121000 Sobic003G351150 Sobic003G351150 Sobic001G278600--Sobic003G351150 Sobic002G171400 Sobic002G171400 Sobic001G278600--Sobic002G171400 Sobic002G021300 Sobic002G021300 Sobic009G076500--Sobic002G021300 Sobic009G076500--Sobic009G076700 Sobic009G076500--Sobic002G037400 Sobic006G026400 Sobic006G026400 Sobic009G076500--Sobic006G026400 Sobic009G076500--Sobic006G203000 Sobic009G167000 Sobic009G167000 Sobic009G076500--Sobic009G167000 Sobic004G244100 Sobic004G244100 Sobic009G076500--Sobic004G244100 Sobic008G059000 Sobic008G059000 Sobic009G076500--Sobic008G059000 Sobic006G194600 Sobic006G194600 Sobic009G076500--Sobic006G194600
Octagon: transcription factors


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