Gene annotation
Transcriptome id Sobic.010G114200.1
Synonym FTR, ERH3, ATKTN1, FRC2, FRA2, LUE1, KTN1, BOT1, AAA1
Functional annotation katanin p60 ATPase-containing subunit, putative, expressed
UniProt A0A194YJK0
Pfam PF05496 PF09336
Panther DB PTHR23074 PTHR23074:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G80350 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g49000.1 : katanin p60 ATPase-containing subunit, putative, expressed
MaizeGDB (Corn) Zm00025a038841 , Zm00025a028013
Brachypodium KQK09212
Barley HORVU3Hr1G063300.1
Wheat TraesCS3A02G265700 , TraesCS3B02G299100 , TraesCS3D02G265900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G055700 - -
2 Sobic.003G014200 protein kinase domain containing protein, expressed K08818: cell division cycle 2-like
3 Sobic.006G150300 expressed protein -
4 Sobic.001G241401 - -
5 Sobic.001G225800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
6 Sobic.002G060000 OsFBX237 - F-box domain containing protein, expressed -
7 Sobic.007G133800 - -
8 Sobic.002G126400 - -
9 Sobic.006G143900 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
10 Sobic.009G152000 Yip1 domain containing protein, expressed -
11 Sobic.003G245300 3-5 exonuclease domain-containing protein, putative, expressed -
12 Sobic.001G269100 lysosomal alpha-mannosidase precursor, putative, expressed -
13 Sobic.008G074100 - -
14 Sobic.005G110460 - -
15 Sobic.005G054401 - -
16 Sobic.007G014000 OsFBX142 - F-box domain containing protein, expressed -
17 Sobic.003G333100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.008G086500 - -
19 Sobic.010G240300 Os12bglu38 - beta-glucosidase/beta-mannosidase/exoglucanase homologue, expressed K05350: beta-glucosidase
20 Sobic.002G194201 - -


Gene co-expression network
sample Sobic010G114200 Sobic010G114200 Sobic005G055700 Sobic005G055700 Sobic010G114200--Sobic005G055700 Sobic003G014200 Sobic003G014200 Sobic010G114200--Sobic003G014200 Sobic006G150300 Sobic006G150300 Sobic010G114200--Sobic006G150300 Sobic001G241401 Sobic001G241401 Sobic010G114200--Sobic001G241401 Sobic001G225800 Sobic001G225800 Sobic010G114200--Sobic001G225800 Sobic002G060000 Sobic002G060000 Sobic010G114200--Sobic002G060000 Sobic007G133800 Sobic007G133800 Sobic010G114200--Sobic007G133800 Sobic002G126400 Sobic002G126400 Sobic010G114200--Sobic002G126400 Sobic006G143900 Sobic006G143900 Sobic010G114200--Sobic006G143900 Sobic001G094700 Sobic001G094700 Sobic005G055700--Sobic001G094700 Sobic002G073600 Sobic002G073600 Sobic003G014200--Sobic002G073600 Sobic009G256601 Sobic009G256601 Sobic003G014200--Sobic009G256601 Sobic005G054401 Sobic005G054401 Sobic003G014200--Sobic005G054401 Sobic003G133000 Sobic003G133000 Sobic003G014200--Sobic003G133000 Sobic001G269100 Sobic001G269100 Sobic003G014200--Sobic001G269100 Sobic003G351100 Sobic003G351100 Sobic003G014200--Sobic003G351100 Sobic010G240300 Sobic010G240300 Sobic003G014200--Sobic010G240300 Sobic006G005300 Sobic006G005300 Sobic003G014200--Sobic006G005300 Sobic007G160501 Sobic007G160501 Sobic003G014200--Sobic007G160501 Sobic003G333100 Sobic003G333100 Sobic006G150300--Sobic003G333100 Sobic001G333700 Sobic001G333700 Sobic006G150300--Sobic001G333700 Sobic002G106600 Sobic002G106600 Sobic006G150300--Sobic002G106600 Sobic004G290600 Sobic004G290600 Sobic006G150300--Sobic004G290600 Sobic007G176900 Sobic007G176900 Sobic006G150300--Sobic007G176900 Sobic006G150300--Sobic001G241401 Sobic006G205400 Sobic006G205400 Sobic006G150300--Sobic006G205400 Sobic008G176500 Sobic008G176500 Sobic006G150300--Sobic008G176500 Sobic005G114201 Sobic005G114201 Sobic006G150300--Sobic005G114201 Sobic001G241401--Sobic003G333100 Sobic003G111000 Sobic003G111000 Sobic001G241401--Sobic003G111000 Sobic001G412900 Sobic001G412900 Sobic001G241401--Sobic001G412900 Sobic006G236300 Sobic006G236300 Sobic001G241401--Sobic006G236300 Sobic010G162700 Sobic010G162700 Sobic001G241401--Sobic010G162700 Sobic006G195000 Sobic006G195000 Sobic001G241401--Sobic006G195000 Sobic007G112400 Sobic007G112400 Sobic001G241401--Sobic007G112400 Sobic005G110120 Sobic005G110120 Sobic001G241401--Sobic005G110120 Sobic009G169500 Sobic009G169500 Sobic001G241401--Sobic009G169500 Sobic005G110460 Sobic005G110460 Sobic001G225800--Sobic005G110460 Sobic010G276100 Sobic010G276100 Sobic001G225800--Sobic010G276100 Sobic004G002800 Sobic004G002800 Sobic001G225800--Sobic004G002800 Sobic003G335200 Sobic003G335200 Sobic001G225800--Sobic003G335200 Sobic001G252900 Sobic001G252900 Sobic001G225800--Sobic001G252900 Sobic005G025600 Sobic005G025600 Sobic001G225800--Sobic005G025600 Sobic009G075400 Sobic009G075400 Sobic001G225800--Sobic009G075400 Sobic005G023700 Sobic005G023700 Sobic001G225800--Sobic005G023700 Sobic010G006900 Sobic010G006900 Sobic001G225800--Sobic010G006900 Sobic004G050900 Sobic004G050900 Sobic002G060000--Sobic004G050900 Sobic009G110333 Sobic009G110333 Sobic002G060000--Sobic009G110333 Sobic005G058600 Sobic005G058600 Sobic002G060000--Sobic005G058600 Sobic003G133201 Sobic003G133201 Sobic002G060000--Sobic003G133201 Sobic005G112500 Sobic005G112500 Sobic002G060000--Sobic005G112500 Sobic003G070400 Sobic003G070400 Sobic002G060000--Sobic003G070400 Sobic009G047100 Sobic009G047100 Sobic002G060000--Sobic009G047100 Sobic008G024200 Sobic008G024200 Sobic002G060000--Sobic008G024200 Sobic008G169101 Sobic008G169101 Sobic002G060000--Sobic008G169101 Sobic008G086500 Sobic008G086500 Sobic007G133800--Sobic008G086500 Sobic002G194300 Sobic002G194300 Sobic007G133800--Sobic002G194300 Sobic007G133800--Sobic010G240300 Sobic005G006400 Sobic005G006400 Sobic007G133800--Sobic005G006400 Sobic007G035200 Sobic007G035200 Sobic007G133800--Sobic007G035200 Sobic007G133800--Sobic003G351100 Sobic007G014000 Sobic007G014000 Sobic007G133800--Sobic007G014000 Sobic010G215000 Sobic010G215000 Sobic007G133800--Sobic010G215000 Sobic010G216100 Sobic010G216100 Sobic007G133800--Sobic010G216100 Sobic007G222100 Sobic007G222100 Sobic002G126400--Sobic007G222100 Sobic010G051000 Sobic010G051000 Sobic002G126400--Sobic010G051000 Sobic002G126400--Sobic001G269100 Sobic009G203900 Sobic009G203900 Sobic002G126400--Sobic009G203900 Sobic001G306500 Sobic001G306500 Sobic002G126400--Sobic001G306500 Sobic001G024900 Sobic001G024900 Sobic002G126400--Sobic001G024900 Sobic005G040700 Sobic005G040700 Sobic002G126400--Sobic005G040700 Sobic003G175950 Sobic003G175950 Sobic002G126400--Sobic003G175950 Sobic001G130500 Sobic001G130500 Sobic002G126400--Sobic001G130500 Sobic004G273600 Sobic004G273600 Sobic006G143900--Sobic004G273600 Sobic005G145400 Sobic005G145400 Sobic006G143900--Sobic005G145400 Sobic006G143900--Sobic007G176900 Sobic001G135950 Sobic001G135950 Sobic006G143900--Sobic001G135950 Sobic004G295050 Sobic004G295050 Sobic006G143900--Sobic004G295050 Sobic010G001200 Sobic010G001200 Sobic006G143900--Sobic010G001200 Sobic005G037700 Sobic005G037700 Sobic006G143900--Sobic005G037700 Sobic003G420500 Sobic003G420500 Sobic006G143900--Sobic003G420500 Sobic006G143900--Sobic003G333100
Octagon: transcription factors


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