Gene annotation
Transcriptome id Sobic.010G208750.1
Synonym -
Functional annotation -
UniProt A0A1W0VU42
Pfam PF00453
Panther DB PTHR10986
NCBI CDD -
KEGG Orthology K02887; RP-L20, MRPL20, large subunit ribosomal protein L20
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR ATCG00660 : ribosomal protein L20
RAP-DB (Rice) LOC_Os08g15306.1 : chloroplast 50S ribosomal protein L20, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT73982 , PNT63588 , KQJ94398
Barley HORVU6Hr1G025320.2 , HORVU6Hr1G022980.1 , HORVU5Hr1G065070.1 , AGP50777 , HORVU6Hr1G037210.1 , HORVU0Hr1G026140.1 , HORVU0Hr1G033470.1 , HORVU0Hr1G032960.1 , HORVU2Hr1G054550.1 , HORVU0Hr1G037890.1 , HORVU0Hr1G028410.1 , HORVU7Hr1G065910.1 , HORVU0Hr1G037440.1 , HORVU0Hr1G035180.1 , HORVU0Hr1G037620.1 , HORVU6Hr1G049370.1 , HORVU0Hr1G033740.1 , HORVU0Hr1G031440.1 , HORVU0Hr1G029890.1 , HORVU0Hr1G036930.1
Wheat TraesCS3B02G187200 , TraesCS2D02G271100 , TraesCS5D02G376900 , TraesCS3D02G053200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G012100 csAtPR5, putative, expressed -
2 Sobic.002G021900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK80 - OsWAK receptor-like protein kinase, expressed -
3 Sobic.007G163433 - -
4 Sobic.003G340350 - -
5 Sobic.004G206800 - -
6 Sobic.008G012150 - -
7 Sobic.002G109200 - -
8 Sobic.005G208200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
9 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
10 Sobic.005G073800 OsFBX411 - F-box domain containing protein, expressed -
11 Sobic.009G180550 - -
12 Sobic.005G223600 stripe rust resistance protein Yr10, putative, expressed -
13 Sobic.001G280100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed -
14 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
15 Sobic.009G018600 TKL_IRAK_CrRLK1L-1.3 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
16 Sobic.007G090451 - -
17 Sobic.003G175800 - -
18 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
19 Sobic.005G223925 - -
20 Sobic.007G112450 - -


Gene co-expression network
sample Sobic010G208750 Sobic010G208750 Sobic008G012100 Sobic008G012100 Sobic010G208750--Sobic008G012100 Sobic002G021900 Sobic002G021900 Sobic010G208750--Sobic002G021900 Sobic007G163433 Sobic007G163433 Sobic010G208750--Sobic007G163433 Sobic003G340350 Sobic003G340350 Sobic010G208750--Sobic003G340350 Sobic004G206800 Sobic004G206800 Sobic010G208750--Sobic004G206800 Sobic008G012150 Sobic008G012150 Sobic010G208750--Sobic008G012150 Sobic002G109200 Sobic002G109200 Sobic010G208750--Sobic002G109200 Sobic005G208200 Sobic005G208200 Sobic010G208750--Sobic005G208200 Sobic002G052100 Sobic002G052100 Sobic010G208750--Sobic002G052100 Sobic008G012100--Sobic008G012150 Sobic008G012100--Sobic007G163433 Sobic008G012100--Sobic002G021900 Sobic008G012100--Sobic003G340350 Sobic008G012100--Sobic004G206800 Sobic008G012100--Sobic010G208750 Sobic008G012100--Sobic002G109200 Sobic008G012100--Sobic002G052100 Sobic008G012100--Sobic005G208200 Sobic002G021900--Sobic007G163433 Sobic002G021900--Sobic003G340350 Sobic002G021900--Sobic004G206800 Sobic002G021900--Sobic008G012100 Sobic009G180550 Sobic009G180550 Sobic002G021900--Sobic009G180550 Sobic002G021900--Sobic010G208750 Sobic002G021900--Sobic002G052100 Sobic002G021900--Sobic008G012150 Sobic003G175800 Sobic003G175800 Sobic002G021900--Sobic003G175800 Sobic007G163433--Sobic003G340350 Sobic007G163433--Sobic004G206800 Sobic007G163433--Sobic002G021900 Sobic007G163433--Sobic008G012100 Sobic007G163433--Sobic002G052100 Sobic007G163433--Sobic009G180550 Sobic002G052000 Sobic002G052000 Sobic007G163433--Sobic002G052000 Sobic007G163433--Sobic002G109200 Sobic007G163433--Sobic010G208750 Sobic003G340350--Sobic004G206800 Sobic003G340350--Sobic007G163433 Sobic003G340350--Sobic002G021900 Sobic003G340350--Sobic008G012100 Sobic003G340350--Sobic002G052100 Sobic003G340350--Sobic002G052000 Sobic003G340350--Sobic009G180550 Sobic002G108700 Sobic002G108700 Sobic003G340350--Sobic002G108700 Sobic003G340350--Sobic002G109200 Sobic004G206800--Sobic003G340350 Sobic004G206800--Sobic007G163433 Sobic004G206800--Sobic002G021900 Sobic004G206800--Sobic008G012100 Sobic004G206800--Sobic002G108700 Sobic004G206800--Sobic002G052100 Sobic004G206800--Sobic002G052000 Sobic004G206800--Sobic009G180550 Sobic004G206800--Sobic002G109200 Sobic008G012150--Sobic008G012100 Sobic008G012150--Sobic002G021900 Sobic008G012150--Sobic007G163433 Sobic008G012150--Sobic002G052100 Sobic008G012150--Sobic003G340350 Sobic008G012150--Sobic003G175800 Sobic008G012150--Sobic004G206800 Sobic008G012150--Sobic009G180550 Sobic006G020300 Sobic006G020300 Sobic008G012150--Sobic006G020300 Sobic002G109200--Sobic007G163433 Sobic002G109200--Sobic008G012100 Sobic002G109200--Sobic002G052100 Sobic002G109200--Sobic003G340350 Sobic002G109200--Sobic004G206800 Sobic002G109200--Sobic002G021900 Sobic009G018600 Sobic009G018600 Sobic002G109200--Sobic009G018600 Sobic001G181100 Sobic001G181100 Sobic002G109200--Sobic001G181100 Sobic002G109200--Sobic002G052000 Sobic005G223600 Sobic005G223600 Sobic005G208200--Sobic005G223600 Sobic003G080300 Sobic003G080300 Sobic005G208200--Sobic003G080300 Sobic005G208200--Sobic008G012100 Sobic005G205200 Sobic005G205200 Sobic005G208200--Sobic005G205200 Sobic005G223925 Sobic005G223925 Sobic005G208200--Sobic005G223925 Sobic005G073800 Sobic005G073800 Sobic005G208200--Sobic005G073800 Sobic005G208200--Sobic010G208750 Sobic007G006200 Sobic007G006200 Sobic005G208200--Sobic007G006200 Sobic004G344600 Sobic004G344600 Sobic005G208200--Sobic004G344600 Sobic002G052100--Sobic002G052000 Sobic002G052100--Sobic001G181100 Sobic004G214800 Sobic004G214800 Sobic002G052100--Sobic004G214800 Sobic005G002400 Sobic005G002400 Sobic002G052100--Sobic005G002400 Sobic002G052100--Sobic003G175800 Sobic003G154400 Sobic003G154400 Sobic002G052100--Sobic003G154400 Sobic002G052100--Sobic006G020300 Sobic003G326000 Sobic003G326000 Sobic002G052100--Sobic003G326000 Sobic010G271800 Sobic010G271800 Sobic002G052100--Sobic010G271800
Octagon: transcription factors


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