Gene annotation
Transcriptome id Sobic.001G280100.3,Sobic.001G280100.1,Sobic.001G280100.2
Synonym Sb01g027550
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ELMO/CED-12 family protein, putative, expressed
UniProt C5WQK3
Pfam PF03109
Panther DB PTHR10566 PTHR10566:SF50
NCBI CDD KOG1235; Predicted unusual protein kinase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07700 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os09g07660.2,LOC_Os09g07660.1 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a018095
Brachypodium KQK12297
Barley HORVU5Hr1G051870.8 , HORVU5Hr1G051870.9 , HORVU5Hr1G051870.1 , HORVU5Hr1G051870.4 , HORVU5Hr1G051870.5 , HORVU5Hr1G051870.6 , HORVU5Hr1G051870.7 , HORVU5Hr1G051870.12 , HORVU5Hr1G051870.13 , HORVU5Hr1G051870.10 , HORVU5Hr1G051870.11 , HORVU5Hr1G051870.14 , HORVU5Hr1G051870.15
Wheat TraesCS5D02G172900 , TraesCS5B02G165400 , TraesCS5B02G165400 , TraesCS5A02G168600
Populus -


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cDNA sequences
Sobic.001G280100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
2 Sobic.002G021900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK80 - OsWAK receptor-like protein kinase, expressed -
3 Sobic.003G269300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
4 Sobic.003G175800 - -
5 Sobic.009G197800 O-methyltransferase, putative, expressed -
6 Sobic.007G163433 - -
7 Sobic.010G208750 - K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
8 Sobic.008G012100 csAtPR5, putative, expressed -
9 Sobic.002G052100 early light-induced protein, chloroplast precursor, putative, expressed -
10 Sobic.003G340350 - -
11 Sobic.003G154400 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
12 Sobic.001G181100 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@SCARECROW, putative, expressed -
13 Sobic.004G214800 receptor-like protein kinase 5 precursor, putative, expressed -
14 Sobic.004G206800 - -
15 Sobic.005G176100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mannose-6-phosphate isomerase, putative, expressed K01809: manA, mannose-6-phosphate isomerase
16 Sobic.006G020300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
17 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
18 Sobic.003G301500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K17623: PUDP, pseudouridine 5'-phosphatase
19 Sobic.002G052000 early light-induced protein, chloroplast precursor, putative, expressed -
20 Sobic.005G208200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic001G280100 Sobic001G280100 Sobic001G181000 Sobic001G181000 Sobic001G280100--Sobic001G181000 Sobic002G021900 Sobic002G021900 Sobic001G280100--Sobic002G021900 Sobic003G269300 Sobic003G269300 Sobic001G280100--Sobic003G269300 Sobic003G175800 Sobic003G175800 Sobic001G280100--Sobic003G175800 Sobic009G197800 Sobic009G197800 Sobic001G280100--Sobic009G197800 Sobic007G163433 Sobic007G163433 Sobic001G280100--Sobic007G163433 Sobic010G208750 Sobic010G208750 Sobic001G280100--Sobic010G208750 Sobic008G012100 Sobic008G012100 Sobic001G280100--Sobic008G012100 Sobic002G052100 Sobic002G052100 Sobic001G280100--Sobic002G052100 Sobic001G181000--Sobic003G175800 Sobic006G020300 Sobic006G020300 Sobic001G181000--Sobic006G020300 Sobic001G181000--Sobic002G052100 Sobic001G181000--Sobic007G163433 Sobic003G340350 Sobic003G340350 Sobic001G181000--Sobic003G340350 Sobic001G181000--Sobic008G012100 Sobic002G052000 Sobic002G052000 Sobic001G181000--Sobic002G052000 Sobic004G206800 Sobic004G206800 Sobic001G181000--Sobic004G206800 Sobic001G181100 Sobic001G181100 Sobic001G181000--Sobic001G181100 Sobic002G021900--Sobic007G163433 Sobic002G021900--Sobic003G340350 Sobic002G021900--Sobic004G206800 Sobic002G021900--Sobic008G012100 Sobic009G180550 Sobic009G180550 Sobic002G021900--Sobic009G180550 Sobic002G021900--Sobic010G208750 Sobic002G021900--Sobic002G052100 Sobic008G012150 Sobic008G012150 Sobic002G021900--Sobic008G012150 Sobic002G021900--Sobic003G175800 Sobic008G064700 Sobic008G064700 Sobic003G269300--Sobic008G064700 Sobic009G225600 Sobic009G225600 Sobic003G269300--Sobic009G225600 Sobic001G485100 Sobic001G485100 Sobic003G269300--Sobic001G485100 Sobic001G046000 Sobic001G046000 Sobic003G269300--Sobic001G046000 Sobic002G047400 Sobic002G047400 Sobic003G269300--Sobic002G047400 Sobic003G228300 Sobic003G228300 Sobic003G269300--Sobic003G228300 Sobic003G186800 Sobic003G186800 Sobic003G269300--Sobic003G186800 Sobic006G221000 Sobic006G221000 Sobic003G269300--Sobic006G221000 Sobic001G207800 Sobic001G207800 Sobic003G269300--Sobic001G207800 Sobic003G175800--Sobic002G052100 Sobic003G175800--Sobic006G020300 Sobic003G175800--Sobic001G181100 Sobic005G002400 Sobic005G002400 Sobic003G175800--Sobic005G002400 Sobic003G154400 Sobic003G154400 Sobic003G175800--Sobic003G154400 Sobic003G175800--Sobic002G052000 Sobic008G002400 Sobic008G002400 Sobic003G175800--Sobic008G002400 Sobic003G175800--Sobic001G181000 Sobic004G214800 Sobic004G214800 Sobic003G175800--Sobic004G214800 Sobic004G035100 Sobic004G035100 Sobic009G197800--Sobic004G035100 Sobic003G340300 Sobic003G340300 Sobic009G197800--Sobic003G340300 Sobic004G344600 Sobic004G344600 Sobic009G197800--Sobic004G344600 Sobic007G065600 Sobic007G065600 Sobic009G197800--Sobic007G065600 Sobic003G339200 Sobic003G339200 Sobic009G197800--Sobic003G339200 Sobic001G112900 Sobic001G112900 Sobic009G197800--Sobic001G112900 Sobic005G176100 Sobic005G176100 Sobic009G197800--Sobic005G176100 Sobic009G197800--Sobic002G021900 Sobic006G191500 Sobic006G191500 Sobic009G197800--Sobic006G191500 Sobic007G163433--Sobic003G340350 Sobic007G163433--Sobic004G206800 Sobic007G163433--Sobic002G021900 Sobic007G163433--Sobic008G012100 Sobic007G163433--Sobic002G052100 Sobic007G163433--Sobic009G180550 Sobic007G163433--Sobic002G052000 Sobic002G109200 Sobic002G109200 Sobic007G163433--Sobic002G109200 Sobic007G163433--Sobic010G208750 Sobic010G208750--Sobic008G012100 Sobic010G208750--Sobic002G021900 Sobic010G208750--Sobic007G163433 Sobic010G208750--Sobic003G340350 Sobic010G208750--Sobic004G206800 Sobic010G208750--Sobic008G012150 Sobic010G208750--Sobic002G109200 Sobic005G208200 Sobic005G208200 Sobic010G208750--Sobic005G208200 Sobic010G208750--Sobic002G052100 Sobic008G012100--Sobic008G012150 Sobic008G012100--Sobic007G163433 Sobic008G012100--Sobic002G021900 Sobic008G012100--Sobic003G340350 Sobic008G012100--Sobic004G206800 Sobic008G012100--Sobic010G208750 Sobic008G012100--Sobic002G109200 Sobic008G012100--Sobic002G052100 Sobic008G012100--Sobic005G208200 Sobic002G052100--Sobic002G052000 Sobic002G052100--Sobic001G181100 Sobic002G052100--Sobic004G214800 Sobic002G052100--Sobic005G002400 Sobic002G052100--Sobic003G175800 Sobic002G052100--Sobic003G154400 Sobic002G052100--Sobic006G020300 Sobic003G326000 Sobic003G326000 Sobic002G052100--Sobic003G326000 Sobic010G271800 Sobic010G271800 Sobic002G052100--Sobic010G271800
Octagon: transcription factors


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