Gene annotation
Transcriptome id Sobic.001G034100.1
Synonym Sb01g003190, PLL4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein phosphatase 2C, putative, expressed
UniProt C5WV10
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF228
NCBI CDD KOG0700; Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT2G28890 : poltergeist like 4
RAP-DB (Rice) LOC_Os03g60650.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a016424 , Zm00025a008813 , Zm00025a038261
Brachypodium KQK00834 , KQK07011 , KQK12430
Barley HORVU1Hr1G005090.3 , HORVU1Hr1G005090.7 , HORVU1Hr1G005090.6 , HORVU5Hr1G012020.2 , HORVU5Hr1G012020.3 , HORVU5Hr1G012020.1 , HORVU5Hr1G113240.2 , HORVU5Hr1G113240.3 , HORVU5Hr1G113240.1 , HORVU5Hr1G113240.4 , HORVU5Hr1G113240.5 , HORVU1Hr1G005090.5
Wheat TraesCS1B02G042100 , TraesCS5A02G479600 , TraesCS5D02G493200 , TraesCS1A02G033700 , TraesCS5B02G492700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
2 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
3 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
4 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.010G149300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
6 Sobic.004G284500 ORM1, putative, expressed -
7 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
8 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
9 Sobic.001G281400 expressed protein -
10 Sobic.008G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
11 Sobic.002G083266 - K00326: cytochrome-b5 reductase
12 Sobic.007G088000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
13 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
14 Sobic.002G333600 universal stress protein domain containing protein, putative, expressed -
15 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
16 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
17 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
19 Sobic.004G308400 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic001G034100 Sobic001G034100 Sobic003G130800 Sobic003G130800 Sobic001G034100--Sobic003G130800 Sobic001G147200 Sobic001G147200 Sobic001G034100--Sobic001G147200 Sobic003G367451 Sobic003G367451 Sobic001G034100--Sobic003G367451 Sobic001G433400 Sobic001G433400 Sobic001G034100--Sobic001G433400 Sobic010G149300 Sobic010G149300 Sobic001G034100--Sobic010G149300 Sobic004G284500 Sobic004G284500 Sobic001G034100--Sobic004G284500 Sobic004G272800 Sobic004G272800 Sobic001G034100--Sobic004G272800 Sobic002G045300 Sobic002G045300 Sobic001G034100--Sobic002G045300 Sobic001G281400 Sobic001G281400 Sobic001G034100--Sobic001G281400 Sobic009G185800 Sobic009G185800 Sobic003G130800--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic003G130800--Sobic003G253000 Sobic001G459200 Sobic001G459200 Sobic003G130800--Sobic001G459200 Sobic006G180200 Sobic006G180200 Sobic003G130800--Sobic006G180200 Sobic002G345300 Sobic002G345300 Sobic003G130800--Sobic002G345300 Sobic004G049900 Sobic004G049900 Sobic003G130800--Sobic004G049900 Sobic004G055200 Sobic004G055200 Sobic003G130800--Sobic004G055200 Sobic010G135000 Sobic010G135000 Sobic003G130800--Sobic010G135000 Sobic003G181500 Sobic003G181500 Sobic003G130800--Sobic003G181500 Sobic003G019200 Sobic003G019200 Sobic001G147200--Sobic003G019200 Sobic010G246000 Sobic010G246000 Sobic001G147200--Sobic010G246000 Sobic002G118600 Sobic002G118600 Sobic001G147200--Sobic002G118600 Sobic010G204300 Sobic010G204300 Sobic001G147200--Sobic010G204300 Sobic006G228300 Sobic006G228300 Sobic001G147200--Sobic006G228300 Sobic001G399100 Sobic001G399100 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic006G263100 Sobic006G263100 Sobic001G147200--Sobic006G263100 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic001G433400--Sobic002G045300 Sobic002G400000 Sobic002G400000 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic009G135600 Sobic009G135600 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic001G433400--Sobic003G220600 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic010G149300--Sobic001G281400 Sobic010G086200 Sobic010G086200 Sobic010G149300--Sobic010G086200 Sobic002G267500 Sobic002G267500 Sobic010G149300--Sobic002G267500 Sobic009G143400 Sobic009G143400 Sobic010G149300--Sobic009G143400 Sobic010G149300--Sobic003G181500 Sobic002G046100 Sobic002G046100 Sobic010G149300--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic010G149300--Sobic004G177700 Sobic010G149300--Sobic002G345300 Sobic009G129000 Sobic009G129000 Sobic010G149300--Sobic009G129000 Sobic010G213400 Sobic010G213400 Sobic004G284500--Sobic010G213400 Sobic006G182100 Sobic006G182100 Sobic004G284500--Sobic006G182100 Sobic009G111600 Sobic009G111600 Sobic004G284500--Sobic009G111600 Sobic002G153500 Sobic002G153500 Sobic004G284500--Sobic002G153500 Sobic004G284500--Sobic004G272800 Sobic003G368500 Sobic003G368500 Sobic004G284500--Sobic003G368500 Sobic009G033700 Sobic009G033700 Sobic004G284500--Sobic009G033700 Sobic001G445800 Sobic001G445800 Sobic004G284500--Sobic001G445800 Sobic004G284500--Sobic001G281400 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic004G272800--Sobic002G345300 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic002G045300--Sobic001G433400 Sobic010G042100 Sobic010G042100 Sobic002G045300--Sobic010G042100 Sobic002G045300--Sobic003G253000 Sobic002G045300--Sobic003G220600 Sobic002G045300--Sobic004G049900 Sobic002G045300--Sobic003G367451 Sobic002G045300--Sobic003G130800 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300
Octagon: transcription factors


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