Gene annotation
Transcriptome id Sobic.001G086000.1
Synonym Sb01g007750, COB
Functional annotation COBRA, putative, expressed
UniProt Q84KI5
Pfam PF04833
Panther DB PTHR31673 PTHR31673:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT5G60920 : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
RAP-DB (Rice) LOC_Os05g32110.1 : COBRA, putative, expressed
MaizeGDB (Corn) Zm00025a016781 , Zm00025a005122 , Zm00025a026522 , Zm00025a048999 , Zm00025a038477 , Zm00025a008196 , Zm00025a043244
Brachypodium PNT74123 , KQK13144 , KQK13145 , KQK13146
Barley HORVU5Hr1G096010.28 , HORVU5Hr1G096010.29 , HORVU5Hr1G096010.22 , HORVU5Hr1G096010.23 , HORVU5Hr1G096010.21 , HORVU5Hr1G096010.26 , HORVU5Hr1G096010.27 , HORVU5Hr1G096010.24 , HORVU5Hr1G096010.25 , HORVU5Hr1G095910.3 , HORVU5Hr1G095910.7 , HORVU5Hr1G095910.6 , HORVU5Hr1G095910.9 , HORVU5Hr1G096010.13 , HORVU5Hr1G096010.12 , HORVU5Hr1G096010.11 , HORVU5Hr1G096010.10 , HORVU5Hr1G096010.17 , HORVU5Hr1G096010.16 , HORVU5Hr1G096010.15 , HORVU5Hr1G096010.14 , HORVU5Hr1G096010.19 , HORVU5Hr1G096010.18 , HORVU5Hr1G095910.12 , HORVU5Hr1G095910.11 , HORVU5Hr1G095910.10 , HORVU5Hr1G096010.3 , HORVU5Hr1G096010.1 , HORVU5Hr1G096010.7 , HORVU5Hr1G096010.6 , HORVU5Hr1G096010.5 , HORVU5Hr1G096010.4 , HORVU5Hr1G096010.9 , HORVU5Hr1G096010.8 , HORVU5Hr1G096010.30
Wheat TraesCS5A02G392000 , TraesCS5D02G401900 , TraesCS5B02G396900
Populus -


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cDNA sequences
Sobic.001G086000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G223450 - -
2 Sobic.002G327400 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.005G066600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
4 Sobic.003G112400 expressed protein -
5 Sobic.008G029400 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@WRKY DNA-binding protein 55("PubMedID : 26759170,PubMedID : 24597475")@WRKY46, expressed -
6 Sobic.006G277800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.006G104700 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
8 Sobic.004G121700 expansin precursor, putative, expressed -
9 Sobic.003G405300 regulatory protein, putative, expressed -
10 Sobic.010G135100 expressed protein -
11 Sobic.002G390000 dirigent, putative, expressed -
12 Sobic.005G110406 - K16223: protein FLOWERING LOCUS T
13 Sobic.002G238600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
14 Sobic.008G077550 - -
15 Sobic.010G212800 expressed protein -
16 Sobic.003G060100 expressed protein -
17 Sobic.008G068300 transferase family protein, putative, expressed -
18 Sobic.005G180500 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
20 Sobic.008G048400 citrate-binding protein precursor, putative, expressed -


Gene co-expression network
sample Sobic001G086000 Sobic001G086000 Sobic005G223450 Sobic005G223450 Sobic001G086000--Sobic005G223450 Sobic002G327400 Sobic002G327400 Sobic001G086000--Sobic002G327400 Sobic005G066600 Sobic005G066600 Sobic001G086000--Sobic005G066600 Sobic003G112400 Sobic003G112400 Sobic001G086000--Sobic003G112400 Sobic008G029400 Sobic008G029400 Sobic001G086000--Sobic008G029400 Sobic006G277800 Sobic006G277800 Sobic001G086000--Sobic006G277800 Sobic006G104700 Sobic006G104700 Sobic001G086000--Sobic006G104700 Sobic004G121700 Sobic004G121700 Sobic001G086000--Sobic004G121700 Sobic003G405300 Sobic003G405300 Sobic001G086000--Sobic003G405300 Sobic005G223450--Sobic001G086000 Sobic005G223450--Sobic005G066600 Sobic005G223450--Sobic008G029400 Sobic005G223450--Sobic002G327400 Sobic005G223450--Sobic006G277800 Sobic005G223450--Sobic004G121700 Sobic001G197300 Sobic001G197300 Sobic005G223450--Sobic001G197300 Sobic005G223450--Sobic006G104700 Sobic005G223450--Sobic003G112400 Sobic002G327400--Sobic003G112400 Sobic003G060100 Sobic003G060100 Sobic002G327400--Sobic003G060100 Sobic002G327201 Sobic002G327201 Sobic002G327400--Sobic002G327201 Sobic001G487500 Sobic001G487500 Sobic002G327400--Sobic001G487500 Sobic002G327400--Sobic001G086000 Sobic002G238600 Sobic002G238600 Sobic002G327400--Sobic002G238600 Sobic010G135100 Sobic010G135100 Sobic002G327400--Sobic010G135100 Sobic002G234400 Sobic002G234400 Sobic002G327400--Sobic002G234400 Sobic008G077550 Sobic008G077550 Sobic002G327400--Sobic008G077550 Sobic005G066600--Sobic001G086000 Sobic005G066600--Sobic005G223450 Sobic005G066600--Sobic002G327400 Sobic005G066600--Sobic004G121700 Sobic010G151200 Sobic010G151200 Sobic005G066600--Sobic010G151200 Sobic005G066600--Sobic003G112400 Sobic005G066600--Sobic003G405300 Sobic005G066600--Sobic002G327201 Sobic005G066600--Sobic010G135100 Sobic003G112400--Sobic003G060100 Sobic003G112400--Sobic010G135100 Sobic003G112400--Sobic002G238600 Sobic003G112400--Sobic006G104700 Sobic003G112400--Sobic001G487500 Sobic003G112400--Sobic002G327400 Sobic003G112400--Sobic002G234400 Sobic001G232500 Sobic001G232500 Sobic003G112400--Sobic001G232500 Sobic002G390000 Sobic002G390000 Sobic003G112400--Sobic002G390000 Sobic004G228500 Sobic004G228500 Sobic008G029400--Sobic004G228500 Sobic001G260000 Sobic001G260000 Sobic008G029400--Sobic001G260000 Sobic008G029400--Sobic003G060100 Sobic009G144700 Sobic009G144700 Sobic008G029400--Sobic009G144700 Sobic008G054150 Sobic008G054150 Sobic008G029400--Sobic008G054150 Sobic004G108200 Sobic004G108200 Sobic008G029400--Sobic004G108200 Sobic006G207000 Sobic006G207000 Sobic008G029400--Sobic006G207000 Sobic008G029400--Sobic006G104700 Sobic003G211400 Sobic003G211400 Sobic008G029400--Sobic003G211400 Sobic006G277500 Sobic006G277500 Sobic006G277800--Sobic006G277500 Sobic005G110406 Sobic005G110406 Sobic006G277800--Sobic005G110406 Sobic006G072201 Sobic006G072201 Sobic006G277800--Sobic006G072201 Sobic007G094300 Sobic007G094300 Sobic006G277800--Sobic007G094300 Sobic006G277800--Sobic010G135100 Sobic002G261300 Sobic002G261300 Sobic006G277800--Sobic002G261300 Sobic008G068300 Sobic008G068300 Sobic006G277800--Sobic008G068300 Sobic008G148200 Sobic008G148200 Sobic006G277800--Sobic008G148200 Sobic006G277800--Sobic008G077550 Sobic006G104700--Sobic002G238600 Sobic006G104700--Sobic003G112400 Sobic006G104700--Sobic002G390000 Sobic006G104700--Sobic003G060100 Sobic006G104700--Sobic006G277800 Sobic006G104700--Sobic006G072201 Sobic001G065900 Sobic001G065900 Sobic006G104700--Sobic001G065900 Sobic006G104700--Sobic005G110406 Sobic006G104700--Sobic010G135100 Sobic004G121700--Sobic007G094300 Sobic004G121700--Sobic006G277800 Sobic004G121700--Sobic005G110406 Sobic002G099451 Sobic002G099451 Sobic004G121700--Sobic002G099451 Sobic004G121700--Sobic003G405300 Sobic004G121700--Sobic006G072201 Sobic004G121700--Sobic008G068300 Sobic004G121700--Sobic006G104700 Sobic005G166700 Sobic005G166700 Sobic004G121700--Sobic005G166700 Sobic002G123500 Sobic002G123500 Sobic003G405300--Sobic002G123500 Sobic003G399700 Sobic003G399700 Sobic003G405300--Sobic003G399700 Sobic003G405300--Sobic005G110406 Sobic001G430100 Sobic001G430100 Sobic003G405300--Sobic001G430100 Sobic003G405300--Sobic006G277800 Sobic004G029100 Sobic004G029100 Sobic003G405300--Sobic004G029100 Sobic003G405300--Sobic008G068300 Sobic007G090460 Sobic007G090460 Sobic003G405300--Sobic007G090460 Sobic010G088800 Sobic010G088800 Sobic003G405300--Sobic010G088800
Octagon: transcription factors


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