Gene annotation
Transcriptome id Sobic.005G180500.1
Synonym UCC1, Sb05g023920
Functional annotation plastocyanin-like domain containing protein, putative, expressed
UniProt C5Y5Y2
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G32300 : uclacyanin 1
RAP-DB (Rice) LOC_Os11g24140.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G077550 - -
2 Sobic.002G238600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
3 Sobic.010G135100 expressed protein -
4 Sobic.004G295600 AP2 domain containing protein, expressed -
5 Sobic.001G311900 OsSCP47 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
6 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
7 Sobic.002G390000 dirigent, putative, expressed -
8 Sobic.003G060100 expressed protein -
9 Sobic.004G229400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
10 Sobic.005G013500 WRKY52, expressed -
11 Sobic.005G110406 - K16223: protein FLOWERING LOCUS T
12 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
13 Sobic.001G143100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
14 Sobic.006G277500 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.002G269100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.006G277800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.002G388800 cytochrome P450 72A1, putative, expressed -
18 Sobic.007G148500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
20 Sobic.004G246600 expressed protein -


Gene co-expression network
sample Sobic005G180500 Sobic005G180500 Sobic008G077550 Sobic008G077550 Sobic005G180500--Sobic008G077550 Sobic002G238600 Sobic002G238600 Sobic005G180500--Sobic002G238600 Sobic010G135100 Sobic010G135100 Sobic005G180500--Sobic010G135100 Sobic004G295600 Sobic004G295600 Sobic005G180500--Sobic004G295600 Sobic001G311900 Sobic001G311900 Sobic005G180500--Sobic001G311900 Sobic004G229500 Sobic004G229500 Sobic005G180500--Sobic004G229500 Sobic002G390000 Sobic002G390000 Sobic005G180500--Sobic002G390000 Sobic003G060100 Sobic003G060100 Sobic005G180500--Sobic003G060100 Sobic004G229400 Sobic004G229400 Sobic005G180500--Sobic004G229400 Sobic008G077550--Sobic005G180500 Sobic008G077550--Sobic002G238600 Sobic008G077550--Sobic004G229500 Sobic008G077550--Sobic003G060100 Sobic008G077550--Sobic004G229400 Sobic006G277800 Sobic006G277800 Sobic008G077550--Sobic006G277800 Sobic006G187900 Sobic006G187900 Sobic008G077550--Sobic006G187900 Sobic008G077550--Sobic010G135100 Sobic005G013500 Sobic005G013500 Sobic008G077550--Sobic005G013500 Sobic002G238600--Sobic002G390000 Sobic001G381400 Sobic001G381400 Sobic002G238600--Sobic001G381400 Sobic002G238600--Sobic005G180500 Sobic006G104700 Sobic006G104700 Sobic002G238600--Sobic006G104700 Sobic002G388800 Sobic002G388800 Sobic002G238600--Sobic002G388800 Sobic001G065900 Sobic001G065900 Sobic002G238600--Sobic001G065900 Sobic004G263100 Sobic004G263100 Sobic002G238600--Sobic004G263100 Sobic002G238600--Sobic003G060100 Sobic004G094900 Sobic004G094900 Sobic002G238600--Sobic004G094900 Sobic005G110406 Sobic005G110406 Sobic010G135100--Sobic005G110406 Sobic010G135100--Sobic005G180500 Sobic002G234400 Sobic002G234400 Sobic010G135100--Sobic002G234400 Sobic003G112400 Sobic003G112400 Sobic010G135100--Sobic003G112400 Sobic010G135100--Sobic004G229400 Sobic010G135100--Sobic002G238600 Sobic010G135100--Sobic006G277800 Sobic001G487500 Sobic001G487500 Sobic010G135100--Sobic001G487500 Sobic007G090460 Sobic007G090460 Sobic010G135100--Sobic007G090460 Sobic002G269100 Sobic002G269100 Sobic004G295600--Sobic002G269100 Sobic001G143100 Sobic001G143100 Sobic004G295600--Sobic001G143100 Sobic004G295600--Sobic002G388800 Sobic004G295600--Sobic006G187900 Sobic004G295600--Sobic001G311900 Sobic004G295600--Sobic004G229500 Sobic004G295600--Sobic005G180500 Sobic010G104300 Sobic010G104300 Sobic004G295600--Sobic010G104300 Sobic004G246600 Sobic004G246600 Sobic004G295600--Sobic004G246600 Sobic007G148500 Sobic007G148500 Sobic001G311900--Sobic007G148500 Sobic001G311900--Sobic004G295600 Sobic001G311900--Sobic001G143100 Sobic001G311900--Sobic005G180500 Sobic001G311900--Sobic002G269100 Sobic001G211200 Sobic001G211200 Sobic001G311900--Sobic001G211200 Sobic001G311900--Sobic004G229500 Sobic001G363400 Sobic001G363400 Sobic001G311900--Sobic001G363400 Sobic001G311900--Sobic004G246600 Sobic004G229500--Sobic004G246600 Sobic004G229500--Sobic005G013500 Sobic004G097100 Sobic004G097100 Sobic004G229500--Sobic004G097100 Sobic003G427800 Sobic003G427800 Sobic004G229500--Sobic003G427800 Sobic009G032000 Sobic009G032000 Sobic004G229500--Sobic009G032000 Sobic004G308900 Sobic004G308900 Sobic004G229500--Sobic004G308900 Sobic009G183900 Sobic009G183900 Sobic004G229500--Sobic009G183900 Sobic009G205500 Sobic009G205500 Sobic004G229500--Sobic009G205500 Sobic002G184300 Sobic002G184300 Sobic004G229500--Sobic002G184300 Sobic002G390000--Sobic002G238600 Sobic002G390000--Sobic001G381400 Sobic002G390000--Sobic004G094900 Sobic002G090100 Sobic002G090100 Sobic002G390000--Sobic002G090100 Sobic003G060100--Sobic001G065900 Sobic003G060100--Sobic001G487500 Sobic009G194400 Sobic009G194400 Sobic003G060100--Sobic009G194400 Sobic003G060100--Sobic002G388800 Sobic003G060100--Sobic005G013500 Sobic003G060100--Sobic003G112400 Sobic004G251800 Sobic004G251800 Sobic003G060100--Sobic004G251800 Sobic004G341000 Sobic004G341000 Sobic003G060100--Sobic004G341000 Sobic003G060100--Sobic002G238600 Sobic004G229400--Sobic009G183900 Sobic004G229400--Sobic002G234400 Sobic004G229400--Sobic009G205500 Sobic007G058400 Sobic007G058400 Sobic004G229400--Sobic007G058400 Sobic004G229400--Sobic003G427800 Sobic004G229400--Sobic004G229500 Sobic010G064000 Sobic010G064000 Sobic004G229400--Sobic010G064000 Sobic008G158732 Sobic008G158732 Sobic004G229400--Sobic008G158732 Sobic004G229400--Sobic005G013500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.