Gene annotation
Transcriptome id Sobic.001G311900.1
Synonym SCPL34, Sb01g030370
Functional annotation OsSCP47 - Putative Serine Carboxypeptidase homologue, expressed
UniProt A0A1Z5S8I3
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF104
NCBI CDD -
KEGG Orthology K16297; serine carboxypeptidase-like clade II
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT5G23210 : serine carboxypeptidase-like 34
RAP-DB (Rice) LOC_Os10g39560.1 : OsSCP47 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a029806 , Zm00025a003199
Brachypodium PNT67794
Barley HORVU1Hr1G052130.1 , HORVU1Hr1G052130.2
Wheat TraesCS1A02G202600 , TraesCS1D02G205600 , TraesCS1A02G202100 , TraesCS4A02G299900 , TraesCS1B02G216700 , TraesCS1B02G216400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G148500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
2 Sobic.004G295600 AP2 domain containing protein, expressed -
3 Sobic.001G143100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
4 Sobic.005G180500 plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.002G269100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.001G211200 RIPER3 - Ripening-related family protein precursor, putative, expressed -
7 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
8 Sobic.001G363400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
9 Sobic.004G246600 expressed protein -
10 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
11 Sobic.005G013500 WRKY52, expressed -
12 Sobic.008G077550 - -
13 Sobic.003G415000 DUF567 domain containing protein, putative, expressed -
14 Sobic.005G067933 - -
15 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
16 Sobic.002G388800 cytochrome P450 72A1, putative, expressed -
17 Sobic.002G358300 expressed protein -
18 Sobic.004G097100 F-box family protein, putative, expressed -
19 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
20 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic001G311900 Sobic001G311900 Sobic007G148500 Sobic007G148500 Sobic001G311900--Sobic007G148500 Sobic004G295600 Sobic004G295600 Sobic001G311900--Sobic004G295600 Sobic001G143100 Sobic001G143100 Sobic001G311900--Sobic001G143100 Sobic005G180500 Sobic005G180500 Sobic001G311900--Sobic005G180500 Sobic002G269100 Sobic002G269100 Sobic001G311900--Sobic002G269100 Sobic001G211200 Sobic001G211200 Sobic001G311900--Sobic001G211200 Sobic004G229500 Sobic004G229500 Sobic001G311900--Sobic004G229500 Sobic001G363400 Sobic001G363400 Sobic001G311900--Sobic001G363400 Sobic004G246600 Sobic004G246600 Sobic001G311900--Sobic004G246600 Sobic007G148500--Sobic004G246600 Sobic007G148500--Sobic001G311900 Sobic007G148500--Sobic001G143100 Sobic007G148500--Sobic004G229500 Sobic005G013500 Sobic005G013500 Sobic007G148500--Sobic005G013500 Sobic009G205500 Sobic009G205500 Sobic007G148500--Sobic009G205500 Sobic007G122800 Sobic007G122800 Sobic007G148500--Sobic007G122800 Sobic007G148500--Sobic002G269100 Sobic002G184300 Sobic002G184300 Sobic007G148500--Sobic002G184300 Sobic004G295600--Sobic002G269100 Sobic004G295600--Sobic001G143100 Sobic002G388800 Sobic002G388800 Sobic004G295600--Sobic002G388800 Sobic006G187900 Sobic006G187900 Sobic004G295600--Sobic006G187900 Sobic004G295600--Sobic001G311900 Sobic004G295600--Sobic004G229500 Sobic004G295600--Sobic005G180500 Sobic010G104300 Sobic010G104300 Sobic004G295600--Sobic010G104300 Sobic004G295600--Sobic004G246600 Sobic001G143100--Sobic002G269100 Sobic001G143100--Sobic004G246600 Sobic001G143100--Sobic004G229500 Sobic001G143100--Sobic007G148500 Sobic004G308900 Sobic004G308900 Sobic001G143100--Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic001G143100--Sobic002G358300 Sobic001G143100--Sobic004G295600 Sobic004G097100 Sobic004G097100 Sobic001G143100--Sobic004G097100 Sobic001G143100--Sobic005G013500 Sobic008G077550 Sobic008G077550 Sobic005G180500--Sobic008G077550 Sobic002G238600 Sobic002G238600 Sobic005G180500--Sobic002G238600 Sobic010G135100 Sobic010G135100 Sobic005G180500--Sobic010G135100 Sobic005G180500--Sobic004G295600 Sobic005G180500--Sobic001G311900 Sobic005G180500--Sobic004G229500 Sobic002G390000 Sobic002G390000 Sobic005G180500--Sobic002G390000 Sobic003G060100 Sobic003G060100 Sobic005G180500--Sobic003G060100 Sobic004G229400 Sobic004G229400 Sobic005G180500--Sobic004G229400 Sobic002G269100--Sobic001G143100 Sobic002G269100--Sobic004G246600 Sobic002G269100--Sobic004G295600 Sobic002G269100--Sobic004G097100 Sobic002G269100--Sobic004G308900 Sobic002G269100--Sobic002G358300 Sobic009G194400 Sobic009G194400 Sobic002G269100--Sobic009G194400 Sobic002G269100--Sobic004G229500 Sobic002G269100--Sobic006G187900 Sobic005G067933 Sobic005G067933 Sobic001G211200--Sobic005G067933 Sobic001G211200--Sobic001G311900 Sobic002G154900 Sobic002G154900 Sobic001G211200--Sobic002G154900 Sobic001G211200--Sobic007G148500 Sobic003G415000 Sobic003G415000 Sobic001G211200--Sobic003G415000 Sobic001G211200--Sobic002G184300 Sobic001G211200--Sobic001G363400 Sobic003G269000 Sobic003G269000 Sobic001G211200--Sobic003G269000 Sobic004G064500 Sobic004G064500 Sobic001G211200--Sobic004G064500 Sobic004G229500--Sobic004G246600 Sobic004G229500--Sobic005G013500 Sobic004G229500--Sobic004G097100 Sobic003G427800 Sobic003G427800 Sobic004G229500--Sobic003G427800 Sobic009G032000 Sobic009G032000 Sobic004G229500--Sobic009G032000 Sobic004G229500--Sobic004G308900 Sobic009G183900 Sobic009G183900 Sobic004G229500--Sobic009G183900 Sobic004G229500--Sobic009G205500 Sobic004G229500--Sobic002G184300 Sobic001G363400--Sobic002G184300 Sobic001G330200 Sobic001G330200 Sobic001G363400--Sobic001G330200 Sobic001G363400--Sobic005G013500 Sobic001G363400--Sobic009G032000 Sobic001G330100 Sobic001G330100 Sobic001G363400--Sobic001G330100 Sobic001G363400--Sobic002G358300 Sobic009G144700 Sobic009G144700 Sobic001G363400--Sobic009G144700 Sobic001G330400 Sobic001G330400 Sobic001G363400--Sobic001G330400 Sobic001G363400--Sobic004G246600 Sobic004G246600--Sobic004G229500 Sobic004G246600--Sobic009G032000 Sobic004G246600--Sobic004G308900 Sobic004G246600--Sobic005G013500 Sobic004G246600--Sobic002G358300 Sobic004G246600--Sobic004G097100 Sobic004G246600--Sobic001G143100 Sobic004G246600--Sobic002G269100 Sobic004G246600--Sobic002G184300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.