Gene annotation
Transcriptome id Sobic.001G151700.1
Synonym Sb01g013180
Functional annotation glutamyl-tRNA, putative, expressed
UniProt C5WR30
Pfam PF02686
Panther DB PTHR13373 PTHR13373:SF22
NCBI CDD -
KEGG Orthology K02435; gatC, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C
Gene Ontology GO:0006450; regulation of translational fidelity


Orthologs (automatic annotation)
TAIR AT4G32915 : -
RAP-DB (Rice) LOC_Os03g44820.1 : glutamyl-tRNA, putative, expressed
MaizeGDB (Corn) Zm00025a017229
Brachypodium -
Barley -
Wheat TraesCS5D02G380100
Populus -


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cDNA sequences
Sobic.001G151700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
3 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
4 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
5 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
6 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.005G110481 - -
8 Sobic.009G098100 T-complex protein, putative, expressed -
9 Sobic.003G373300 DNA polymerase I, putative, expressed -
10 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
11 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
12 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
13 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
14 Sobic.010G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Superoxide dismutase (Os)(PubMedID : 27208977)@superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
15 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
16 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
17 Sobic.003G383600 - -
18 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
19 Sobic.003G383500 rhodanese-like, putative, expressed -
20 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL


Gene co-expression network
sample Sobic001G151700 Sobic001G151700 Sobic001G383900 Sobic001G383900 Sobic001G151700--Sobic001G383900 Sobic007G026200 Sobic007G026200 Sobic001G151700--Sobic007G026200 Sobic001G069500 Sobic001G069500 Sobic001G151700--Sobic001G069500 Sobic010G012900 Sobic010G012900 Sobic001G151700--Sobic010G012900 Sobic003G132600 Sobic003G132600 Sobic001G151700--Sobic003G132600 Sobic001G188600 Sobic001G188600 Sobic001G151700--Sobic001G188600 Sobic005G110481 Sobic005G110481 Sobic001G151700--Sobic005G110481 Sobic009G098100 Sobic009G098100 Sobic001G151700--Sobic009G098100 Sobic003G373300 Sobic003G373300 Sobic001G151700--Sobic003G373300 Sobic001G453300 Sobic001G453300 Sobic001G383900--Sobic001G453300 Sobic001G027600 Sobic001G027600 Sobic001G383900--Sobic001G027600 Sobic001G076500 Sobic001G076500 Sobic001G383900--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G383900--Sobic004G044000 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic009G001500 Sobic009G001500 Sobic001G383900--Sobic009G001500 Sobic007G026200--Sobic001G069500 Sobic007G211100 Sobic007G211100 Sobic007G026200--Sobic007G211100 Sobic007G026200--Sobic001G188600 Sobic004G109000 Sobic004G109000 Sobic007G026200--Sobic004G109000 Sobic002G189600 Sobic002G189600 Sobic007G026200--Sobic002G189600 Sobic006G281066 Sobic006G281066 Sobic007G026200--Sobic006G281066 Sobic007G026200--Sobic010G012900 Sobic001G357200 Sobic001G357200 Sobic007G026200--Sobic001G357200 Sobic004G296800 Sobic004G296800 Sobic007G026200--Sobic004G296800 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic001G069500--Sobic007G211100 Sobic003G295800 Sobic003G295800 Sobic001G069500--Sobic003G295800 Sobic003G383600 Sobic003G383600 Sobic001G069500--Sobic003G383600 Sobic008G123600 Sobic008G123600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic001G069500--Sobic008G030000 Sobic007G013400 Sobic007G013400 Sobic001G069500--Sobic007G013400 Sobic010G012900--Sobic001G188600 Sobic010G012900--Sobic001G357200 Sobic010G011200 Sobic010G011200 Sobic010G012900--Sobic010G011200 Sobic010G012900--Sobic001G383900 Sobic001G172300 Sobic001G172300 Sobic010G012900--Sobic001G172300 Sobic007G034500 Sobic007G034500 Sobic010G012900--Sobic007G034500 Sobic003G383500 Sobic003G383500 Sobic010G012900--Sobic003G383500 Sobic006G114300 Sobic006G114300 Sobic010G012900--Sobic006G114300 Sobic010G012900--Sobic009G098100 Sobic003G132600--Sobic001G427000 Sobic003G132600--Sobic001G453300 Sobic003G132600--Sobic001G383900 Sobic003G132600--Sobic001G076500 Sobic003G132600--Sobic001G027600 Sobic003G132600--Sobic001G391400 Sobic003G256200 Sobic003G256200 Sobic003G132600--Sobic003G256200 Sobic002G343700 Sobic002G343700 Sobic003G132600--Sobic002G343700 Sobic003G393800 Sobic003G393800 Sobic003G132600--Sobic003G393800 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic001G188600--Sobic008G030000 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic009G098100--Sobic001G188600 Sobic009G098100--Sobic001G453300 Sobic009G098100--Sobic001G383900 Sobic009G098100--Sobic001G027600 Sobic009G098100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic009G098100--Sobic004G076000 Sobic002G020100 Sobic002G020100 Sobic009G098100--Sobic002G020100 Sobic001G099000 Sobic001G099000 Sobic003G373300--Sobic001G099000 Sobic006G166000 Sobic006G166000 Sobic003G373300--Sobic006G166000 Sobic003G373300--Sobic001G391400 Sobic003G373300--Sobic001G383900 Sobic002G158800 Sobic002G158800 Sobic003G373300--Sobic002G158800 Sobic003G373300--Sobic005G110481 Sobic003G373300--Sobic009G104700 Sobic010G027200 Sobic010G027200 Sobic003G373300--Sobic010G027200 Sobic005G022800 Sobic005G022800 Sobic003G373300--Sobic005G022800
Octagon: transcription factors


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