Gene annotation
| Transcriptome id | Sobic.001G210900.1 |
|---|---|
| Synonym | Sb01g018650 |
| Functional annotation | RIPER3 - Ripening-related family protein precursor, putative, expressed |
| UniProt | C5WXF9 |
| Pfam | - |
| Panther DB | PTHR33191 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os10g34760.1 : RIPER3 - Ripening-related family protein precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a006517 , Zm00025a006516 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G080400 | zinc knuckle domain containing protein, expressed | - |
| 2 | Sobic.002G263500 | - | - |
| 3 | Sobic.008G062800 | expressed protein | - |
| 4 | Sobic.001G276700 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 5 | Sobic.004G273900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.010G090100 | phosphoglycerate mutase, putative, expressed | K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase |
| 7 | Sobic.001G382266 | - | - |
| 8 | Sobic.001G382266 | - | - |
| 9 | Sobic.001G382266 | - | - |
| 10 | Sobic.001G382266 | - | - |
| 11 | Sobic.001G382266 | - | - |
| 12 | Sobic.001G382266 | - | - |
| 13 | Sobic.001G382266 | - | - |
| 14 | Sobic.008G044500 | zinc finger superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@expressed protein | - |
| 15 | Sobic.010G222400 | MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 16 | Sobic.007G151300 | Cupin domain containing protein, expressed | - |
| 17 | Sobic.007G058300 | AP2 domain containing protein, expressed | - |
| 18 | Sobic.008G092932 | - | - |
| 19 | Sobic.002G421800 | Up-reguralion under drought(PubMedID : 24916767)@homeobox domain containing protein, expressed | - |
| 20 | Sobic.008G173601 | - | - |
Gene co-expression network
Octagon: transcription factors
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