Gene annotation
Transcriptome id Sobic.001G332200.1
Synonym Sb01g032090, SAG12
Functional annotation cysteine proteinase EP-B 1 precursor, putative, expressed
UniProt C5WVP4
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF392
NCBI CDD KOG1542; Cysteine proteinase Cathepsin F
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os09g21370.1 : cysteine proteinase EP-B 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039415 , Zm00025a002948 , Zm00025a026361 , Zm00025a016788
Brachypodium KQK12304 , KQK15435 , KQJ90836 , KQJ88596
Barley HORVU3Hr1G091800.1 , HORVU5Hr1G074780.3 , HORVU5Hr1G074780.2 , HORVU4Hr1G012700.4 , HORVU4Hr1G012700.5 , HORVU4Hr1G012700.2 , HORVU4Hr1G012700.3 , HORVU4Hr1G012700.1 , HORVU5Hr1G074780.1
Wheat TraesCS5B02G274600 , TraesCS4B02G076200 , TraesCS4B02G076200 , TraesCS2A02G543500 , TraesCS3D02G232500 , TraesCS5D02G282500 , TraesCS2D02G057200 , TraesCS4D02G074800 , TraesCS4D02G074800 , TraesCS2B02G573700 , TraesCS2D02G544800 , TraesCS4A02G238600 , TraesCS4A02G238600 , TraesCS1B02G409200 , TraesCS5B02G138300
Populus -


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cDNA sequences
Sobic.001G332200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G136700 GPI-anchored protein, putative, expressed -
2 Sobic.002G157900 - -
3 Sobic.001G024300 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.004G131400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
5 Sobic.010G056500 - -
6 Sobic.002G417401 - -
7 Sobic.009G116100 conserved hypothetical protein -
8 Sobic.004G025600 - -
9 Sobic.009G090400 - -
10 Sobic.007G222200 - -
11 Sobic.004G350400 pectinesterase, putative, expressed K01051: pectinesterase
12 Sobic.001G540000 expansin precursor, putative, expressed -
13 Sobic.002G282600 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
14 Sobic.002G091300 pectinesterase inhibitor domain containing protein, expressed -
15 Sobic.003G009600 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.002G091200 pectinesterase inhibitor domain containing protein, expressed -
17 Sobic.009G089000 ATCHX, putative, expressed -
18 Sobic.001G220800 AGC_AGC_other_NDRh_TRCd.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
19 Sobic.001G278100 serine/threonine-protein kinase, putative, expressed -
20 Sobic.004G147700 pectinesterase inhibitor domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G332200 Sobic001G332200 Sobic006G136700 Sobic006G136700 Sobic001G332200--Sobic006G136700 Sobic002G157900 Sobic002G157900 Sobic001G332200--Sobic002G157900 Sobic001G024300 Sobic001G024300 Sobic001G332200--Sobic001G024300 Sobic004G131400 Sobic004G131400 Sobic001G332200--Sobic004G131400 Sobic010G056500 Sobic010G056500 Sobic001G332200--Sobic010G056500 Sobic002G417401 Sobic002G417401 Sobic001G332200--Sobic002G417401 Sobic009G116100 Sobic009G116100 Sobic001G332200--Sobic009G116100 Sobic004G025600 Sobic004G025600 Sobic001G332200--Sobic004G025600 Sobic009G090400 Sobic009G090400 Sobic001G332200--Sobic009G090400 Sobic006G136700--Sobic001G332200 Sobic006G136700--Sobic001G024300 Sobic006G136700--Sobic009G116100 Sobic006G136700--Sobic002G157900 Sobic006G136700--Sobic002G417401 Sobic006G136700--Sobic009G090400 Sobic006G136700--Sobic004G131400 Sobic003G009600 Sobic003G009600 Sobic006G136700--Sobic003G009600 Sobic007G222200 Sobic007G222200 Sobic006G136700--Sobic007G222200 Sobic002G157900--Sobic009G090400 Sobic002G157900--Sobic006G136700 Sobic002G157900--Sobic001G024300 Sobic002G157900--Sobic001G332200 Sobic002G157900--Sobic007G222200 Sobic002G157900--Sobic002G417401 Sobic002G157900--Sobic009G116100 Sobic005G122100 Sobic005G122100 Sobic002G157900--Sobic005G122100 Sobic002G157900--Sobic003G009600 Sobic001G024300--Sobic009G116100 Sobic001G024300--Sobic006G136700 Sobic001G024300--Sobic003G009600 Sobic001G024300--Sobic002G157900 Sobic001G024300--Sobic007G222200 Sobic001G024300--Sobic002G417401 Sobic001G024300--Sobic009G090400 Sobic001G024300--Sobic001G332200 Sobic009G089000 Sobic009G089000 Sobic001G024300--Sobic009G089000 Sobic004G131400--Sobic010G056500 Sobic004G131400--Sobic004G025600 Sobic001G540000 Sobic001G540000 Sobic004G131400--Sobic001G540000 Sobic004G350400 Sobic004G350400 Sobic004G131400--Sobic004G350400 Sobic002G091200 Sobic002G091200 Sobic004G131400--Sobic002G091200 Sobic004G131400--Sobic001G332200 Sobic002G282600 Sobic002G282600 Sobic004G131400--Sobic002G282600 Sobic004G131400--Sobic006G136700 Sobic004G137200 Sobic004G137200 Sobic004G131400--Sobic004G137200 Sobic010G056500--Sobic004G131400 Sobic010G056500--Sobic004G025600 Sobic010G056500--Sobic001G540000 Sobic010G056500--Sobic004G350400 Sobic010G056500--Sobic002G091200 Sobic010G056500--Sobic001G332200 Sobic010G056500--Sobic002G282600 Sobic002G106800 Sobic002G106800 Sobic010G056500--Sobic002G106800 Sobic010G056500--Sobic004G137200 Sobic002G417401--Sobic007G222200 Sobic002G417401--Sobic001G024300 Sobic002G417401--Sobic001G332200 Sobic002G417401--Sobic002G157900 Sobic002G417401--Sobic009G090400 Sobic002G417401--Sobic006G136700 Sobic002G417401--Sobic009G116100 Sobic002G417401--Sobic003G009600 Sobic002G091300 Sobic002G091300 Sobic002G417401--Sobic002G091300 Sobic009G116100--Sobic001G024300 Sobic009G116100--Sobic006G136700 Sobic009G116100--Sobic003G009600 Sobic009G116100--Sobic001G332200 Sobic009G116100--Sobic002G091300 Sobic009G116100--Sobic002G157900 Sobic009G116100--Sobic002G417401 Sobic009G116100--Sobic002G282600 Sobic009G116100--Sobic009G089000 Sobic004G025600--Sobic001G540000 Sobic004G025600--Sobic004G131400 Sobic004G025600--Sobic010G056500 Sobic004G025600--Sobic002G091200 Sobic004G025600--Sobic004G350400 Sobic004G025600--Sobic004G137200 Sobic004G025600--Sobic002G106800 Sobic003G173800 Sobic003G173800 Sobic004G025600--Sobic003G173800 Sobic004G025600--Sobic001G332200 Sobic009G090400--Sobic002G157900 Sobic009G090400--Sobic007G222200 Sobic009G090400--Sobic005G122100 Sobic009G090400--Sobic001G024300 Sobic009G090400--Sobic002G417401 Sobic009G090400--Sobic003G009600 Sobic009G090400--Sobic006G136700 Sobic009G090400--Sobic001G332200 Sobic009G090400--Sobic009G116100
Octagon: transcription factors


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