Gene annotation
| Transcriptome id | Sobic.001G350200.2,Sobic.001G350200.4,Sobic.001G350200.5,Sobic.001G350200.3 |
|---|---|
| Synonym | 3BETAHSD/D1, AT3BETAHSD/D1 |
| Functional annotation | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed |
| UniProt | A0A1Z5S9S2 , A0A1Z5S9I0 , A0A1Z5S991 , A0A1Z5S994 , A1E9Q9 |
| Pfam | PF01370 PF07993 |
| Panther DB | PTHR10366 PTHR10366:SF242 |
| NCBI CDD | KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases |
| KEGG Orthology | K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| Gene Ontology | GO:0003824; catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT1G47290 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g29150.1,LOC_Os03g29170.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed,NAD dependent epimerase/dehydratase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a002788 , Zm00025a052162 |
| Brachypodium | - |
| Barley | HORVU7Hr1G118180.6 , HORVU7Hr1G118180.4 , HORVU7Hr1G118180.5 , HORVU7Hr1G118180.2 , HORVU7Hr1G118180.3 , HORVU7Hr1G118180.1 |
| Wheat | TraesCS7A02G538700 , TraesCS7A02G538700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 2 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 3 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 4 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 5 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 6 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 7 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 8 | Sobic.001G350200 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 9 | Sobic.008G088400 | - | - |
| 10 | Sobic.008G103000 | MBTB11 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 11 | Sobic.001G394250 | - | - |
| 12 | Sobic.001G323801 | - | - |
| 13 | Sobic.007G098950 | - | - |
| 14 | Sobic.005G056201 | - | - |
| 15 | Sobic.004G076000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | - |
| 16 | Sobic.002G020000 | wax synthase, putative, expressed | - |
| 17 | Sobic.003G074600 | Lecithin: cholesterol acyltransferase family protein (At)(PubMedID : 27208977)@lecithin:cholesterol acyltransferase, putative, expressed | K06129: lysophospholipase III |
| 18 | Sobic.001G170900 | expressed protein | - |
| 19 | Sobic.001G519400 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 20 | Sobic.001G017000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed | K02990: RP-S6, MRPS6, small subunit ribosomal protein S6 |
Gene co-expression network
Octagon: transcription factors
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