Gene annotation
Transcriptome id Sobic.001G387000.1,Sobic.001G387000.2
Synonym Sb01g036700, ATCRT1
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6QNH6
Pfam PF14369 PF13639
Panther DB PTHR22763 PTHR22763:SF41
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G56340 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g20870.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002271 , Zm00025a052471
Brachypodium KQK21885 , KQK21886
Barley HORVU4Hr1G051610.1 , HORVU4Hr1G051610.3 , HORVU4Hr1G051610.2 , HORVU3Hr1G039210.1 , HORVU3Hr1G039220.4 , HORVU3Hr1G039220.1 , HORVU3Hr1G039220.3 , HORVU3Hr1G039220.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G257100 regulatory protein, putative, expressed -
2 Sobic.001G145050 - -
3 Sobic.002G209100 glutamate receptor, putative, expressed -
4 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
5 Sobic.001G339600 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
6 Sobic.002G271600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.004G258400 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
8 Sobic.005G085500 - -
9 Sobic.009G037200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
10 Sobic.009G085700 - -
11 Sobic.010G098350 - -
12 Sobic.005G063900 expressed protein -
13 Sobic.008G085350 - -
14 Sobic.006G246200 protein kinase, putative, expressed -
15 Sobic.004G209500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.009G255100 hypersensitive-induced response protein, putative, expressed -
17 Sobic.001G288100 zinc-binding protein, putative, expressed -
18 Sobic.005G133166 - -
19 Sobic.004G195800 heavy metal associated domain containing protein, expressed -
20 Sobic.001G340700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@EARLY flowering protein, putative, expressed -


Gene co-expression network
sample Sobic001G387000 Sobic001G387000 Sobic002G257100 Sobic002G257100 Sobic001G387000--Sobic002G257100 Sobic001G145050 Sobic001G145050 Sobic001G387000--Sobic001G145050 Sobic002G209100 Sobic002G209100 Sobic001G387000--Sobic002G209100 Sobic002G041800 Sobic002G041800 Sobic001G387000--Sobic002G041800 Sobic001G339600 Sobic001G339600 Sobic001G387000--Sobic001G339600 Sobic002G271600 Sobic002G271600 Sobic001G387000--Sobic002G271600 Sobic004G258400 Sobic004G258400 Sobic001G387000--Sobic004G258400 Sobic005G085500 Sobic005G085500 Sobic001G387000--Sobic005G085500 Sobic009G037200 Sobic009G037200 Sobic001G387000--Sobic009G037200 Sobic002G257100--Sobic002G209100 Sobic002G257100--Sobic002G041800 Sobic001G321600 Sobic001G321600 Sobic002G257100--Sobic001G321600 Sobic010G089200 Sobic010G089200 Sobic002G257100--Sobic010G089200 Sobic002G257100--Sobic004G258400 Sobic001G520100 Sobic001G520100 Sobic002G257100--Sobic001G520100 Sobic005G093300 Sobic005G093300 Sobic002G257100--Sobic005G093300 Sobic002G265400 Sobic002G265400 Sobic002G257100--Sobic002G265400 Sobic005G063900 Sobic005G063900 Sobic002G257100--Sobic005G063900 Sobic009G255100 Sobic009G255100 Sobic001G145050--Sobic009G255100 Sobic001G145050--Sobic002G041800 Sobic002G366100 Sobic002G366100 Sobic001G145050--Sobic002G366100 Sobic006G060800 Sobic006G060800 Sobic001G145050--Sobic006G060800 Sobic003G402200 Sobic003G402200 Sobic001G145050--Sobic003G402200 Sobic004G078600 Sobic004G078600 Sobic001G145050--Sobic004G078600 Sobic001G145050--Sobic005G085500 Sobic001G145050--Sobic002G271600 Sobic001G145050--Sobic002G209100 Sobic004G195800 Sobic004G195800 Sobic002G209100--Sobic004G195800 Sobic002G209100--Sobic002G041800 Sobic002G209100--Sobic005G085500 Sobic010G120800 Sobic010G120800 Sobic002G209100--Sobic010G120800 Sobic009G252100 Sobic009G252100 Sobic002G209100--Sobic009G252100 Sobic004G217700 Sobic004G217700 Sobic002G209100--Sobic004G217700 Sobic002G209100--Sobic002G271600 Sobic004G209500 Sobic004G209500 Sobic002G209100--Sobic004G209500 Sobic002G209100--Sobic002G257100 Sobic002G041800--Sobic005G085500 Sobic002G041800--Sobic004G078600 Sobic002G423600 Sobic002G423600 Sobic002G041800--Sobic002G423600 Sobic002G041800--Sobic004G195800 Sobic002G041800--Sobic009G252100 Sobic002G041800--Sobic004G217700 Sobic002G041800--Sobic002G209100 Sobic002G041800--Sobic006G060800 Sobic001G201800 Sobic001G201800 Sobic002G041800--Sobic001G201800 Sobic004G092000 Sobic004G092000 Sobic001G339600--Sobic004G092000 Sobic003G138400 Sobic003G138400 Sobic001G339600--Sobic003G138400 Sobic010G214200 Sobic010G214200 Sobic001G339600--Sobic010G214200 Sobic003G339900 Sobic003G339900 Sobic001G339600--Sobic003G339900 Sobic008G142100 Sobic008G142100 Sobic001G339600--Sobic008G142100 Sobic002G216500 Sobic002G216500 Sobic001G339600--Sobic002G216500 Sobic004G220600 Sobic004G220600 Sobic001G339600--Sobic004G220600 Sobic001G339600--Sobic001G387000 Sobic001G319100 Sobic001G319100 Sobic001G339600--Sobic001G319100 Sobic007G014600 Sobic007G014600 Sobic002G271600--Sobic007G014600 Sobic002G271600--Sobic002G209100 Sobic002G271600--Sobic002G041800 Sobic002G271600--Sobic004G217700 Sobic002G271600--Sobic001G145050 Sobic009G205600 Sobic009G205600 Sobic002G271600--Sobic009G205600 Sobic006G053700 Sobic006G053700 Sobic002G271600--Sobic006G053700 Sobic002G271600--Sobic004G195800 Sobic002G271600--Sobic002G366100 Sobic004G258400--Sobic002G257100 Sobic004G258400--Sobic008G142100 Sobic001G136300 Sobic001G136300 Sobic004G258400--Sobic001G136300 Sobic004G258400--Sobic002G041800 Sobic001G450500 Sobic001G450500 Sobic004G258400--Sobic001G450500 Sobic006G246200 Sobic006G246200 Sobic004G258400--Sobic006G246200 Sobic004G258400--Sobic005G093300 Sobic001G362001 Sobic001G362001 Sobic004G258400--Sobic001G362001 Sobic004G258400--Sobic009G037200 Sobic005G085500--Sobic002G041800 Sobic008G181801 Sobic008G181801 Sobic005G085500--Sobic008G181801 SobicK044407 SobicK044407 Sobic005G085500--SobicK044407 Sobic005G085500--Sobic004G195800 Sobic005G085500--Sobic002G209100 Sobic006G045000 Sobic006G045000 Sobic005G085500--Sobic006G045000 Sobic001G012000 Sobic001G012000 Sobic005G085500--Sobic001G012000 Sobic005G085500--Sobic002G423600 Sobic005G085500--Sobic004G078600 Sobic010G193000 Sobic010G193000 Sobic009G037200--Sobic010G193000 Sobic009G037200--Sobic006G246200 Sobic009G037200--Sobic002G257100 Sobic005G203300 Sobic005G203300 Sobic009G037200--Sobic005G203300 Sobic005G217700 Sobic005G217700 Sobic009G037200--Sobic005G217700 Sobic007G157100 Sobic007G157100 Sobic009G037200--Sobic007G157100 Sobic009G037200--Sobic001G136300 Sobic009G037200--Sobic005G085500 Sobic007G089300 Sobic007G089300 Sobic009G037200--Sobic007G089300
Octagon: transcription factors


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