Gene annotation
Transcriptome id Sobic.001G405400.1,Sobic.001G405400.2
Synonym Sb01g038350
Functional annotation chloroplast unusual positioning protein, putative, expressed
UniProt A0A1B6QNT0 , A0A1B6QNS6
Pfam -
Panther DB PTHR31342 PTHR31342:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07120 : -
RAP-DB (Rice) LOC_Os03g18300.1 : chloroplast unusual positioning protein, putative, expressed
MaizeGDB (Corn) Zm00025a002006 , Zm00025a052647
Brachypodium KQK22140
Barley HORVU4Hr1G056000.24 , HORVU4Hr1G056000.25 , HORVU4Hr1G056000.26 , HORVU4Hr1G056000.27 , HORVU4Hr1G056000.28 , HORVU4Hr1G056000.29
Wheat TraesCS4D02G194100 , TraesCS4A02G111000 , TraesCS4B02G193100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G205100 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
2 Sobic.005G201100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
3 Sobic.006G139900 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
4 Sobic.010G000401 - -
5 Sobic.006G220100 - -
6 Sobic.004G045000 phytosulfokine receptor precursor, putative, expressed -
7 Sobic.010G210400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
8 Sobic.001G005100 lipid binding protein, putative, expressed -
9 Sobic.003G391800 expressed protein -
10 Sobic.002G221000 PHD-finger domain containing protein, putative, expressed -
11 Sobic.003G059500 verticillium wilt disease resistance protein, putative, expressed -
12 Sobic.007G187500 - -
13 Sobic.010G183700 CESA11 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.002G010150 - -
15 Sobic.004G007200 - -
16 Sobic.002G076450 - -
17 Sobic.009G079700 C2 domain containing protein, putative, expressed -
18 Sobic.002G365300 NBS-LRR type disease resistance protein, putative, expressed -
19 Sobic.002G429900 PHD finger family protein, putative, expressed -
20 Sobic.009G047033 - -


Gene co-expression network
sample Sobic001G405400 Sobic001G405400 Sobic002G205100 Sobic002G205100 Sobic001G405400--Sobic002G205100 Sobic005G201100 Sobic005G201100 Sobic001G405400--Sobic005G201100 Sobic006G139900 Sobic006G139900 Sobic001G405400--Sobic006G139900 Sobic010G000401 Sobic010G000401 Sobic001G405400--Sobic010G000401 Sobic006G220100 Sobic006G220100 Sobic001G405400--Sobic006G220100 Sobic004G045000 Sobic004G045000 Sobic001G405400--Sobic004G045000 Sobic010G210400 Sobic010G210400 Sobic001G405400--Sobic010G210400 Sobic001G005100 Sobic001G005100 Sobic001G405400--Sobic001G005100 Sobic003G391800 Sobic003G391800 Sobic001G405400--Sobic003G391800 Sobic002G205100--Sobic001G405400 Sobic002G205100--Sobic005G201100 Sobic009G047033 Sobic009G047033 Sobic002G205100--Sobic009G047033 Sobic002G076450 Sobic002G076450 Sobic002G205100--Sobic002G076450 Sobic007G182400 Sobic007G182400 Sobic002G205100--Sobic007G182400 Sobic004G343733 Sobic004G343733 Sobic002G205100--Sobic004G343733 Sobic003G091900 Sobic003G091900 Sobic002G205100--Sobic003G091900 Sobic010G213100 Sobic010G213100 Sobic002G205100--Sobic010G213100 Sobic010G051600 Sobic010G051600 Sobic002G205100--Sobic010G051600 Sobic005G201100--Sobic002G076450 Sobic010G051900 Sobic010G051900 Sobic005G201100--Sobic010G051900 Sobic005G201100--Sobic009G047033 Sobic008G119100 Sobic008G119100 Sobic005G201100--Sobic008G119100 Sobic005G201100--Sobic010G000401 Sobic006G049000 Sobic006G049000 Sobic005G201100--Sobic006G049000 Sobic002G215600 Sobic002G215600 Sobic005G201100--Sobic002G215600 Sobic004G007200 Sobic004G007200 Sobic005G201100--Sobic004G007200 Sobic003G059500 Sobic003G059500 Sobic005G201100--Sobic003G059500 Sobic006G139900--Sobic010G210400 Sobic006G139900--Sobic010G000401 Sobic006G139900--Sobic001G005100 Sobic002G365300 Sobic002G365300 Sobic006G139900--Sobic002G365300 Sobic007G187500 Sobic007G187500 Sobic006G139900--Sobic007G187500 Sobic004G089801 Sobic004G089801 Sobic006G139900--Sobic004G089801 Sobic006G139900--Sobic006G220100 Sobic006G139900--Sobic004G045000 Sobic004G347833 Sobic004G347833 Sobic006G139900--Sobic004G347833 Sobic010G000401--Sobic001G005100 Sobic010G000401--Sobic004G045000 Sobic010G000401--Sobic003G391800 Sobic010G000401--Sobic003G059500 Sobic010G000401--Sobic002G365300 Sobic002G033100 Sobic002G033100 Sobic010G000401--Sobic002G033100 Sobic010G000401--Sobic004G089801 Sobic001G403900 Sobic001G403900 Sobic010G000401--Sobic001G403900 Sobic001G468900 Sobic001G468900 Sobic010G000401--Sobic001G468900 Sobic008G154500 Sobic008G154500 Sobic006G220100--Sobic008G154500 Sobic002G221000 Sobic002G221000 Sobic006G220100--Sobic002G221000 Sobic006G220100--Sobic001G403900 Sobic006G220100--Sobic001G005100 Sobic004G272000 Sobic004G272000 Sobic006G220100--Sobic004G272000 Sobic004G055400 Sobic004G055400 Sobic006G220100--Sobic004G055400 Sobic008G176266 Sobic008G176266 Sobic006G220100--Sobic008G176266 Sobic010G129900 Sobic010G129900 Sobic006G220100--Sobic010G129900 Sobic001G221750 Sobic001G221750 Sobic006G220100--Sobic001G221750 Sobic004G045000--Sobic003G059500 Sobic004G045000--Sobic010G000401 Sobic004G045000--Sobic001G005100 Sobic004G045000--Sobic003G391800 Sobic003G278800 Sobic003G278800 Sobic004G045000--Sobic003G278800 Sobic002G268250 Sobic002G268250 Sobic004G045000--Sobic002G268250 Sobic004G045000--Sobic002G215600 Sobic002G162900 Sobic002G162900 Sobic004G045000--Sobic002G162900 Sobic003G356500 Sobic003G356500 Sobic004G045000--Sobic003G356500 Sobic009G079700 Sobic009G079700 Sobic010G210400--Sobic009G079700 Sobic001G070900 Sobic001G070900 Sobic010G210400--Sobic001G070900 Sobic010G210400--Sobic004G272000 Sobic010G210400--Sobic004G089801 Sobic010G210400--Sobic004G007200 Sobic010G210400--Sobic002G365300 Sobic010G210400--Sobic004G343733 Sobic010G187950 Sobic010G187950 Sobic010G210400--Sobic010G187950 Sobic010G210400--Sobic002G215600 Sobic001G005100--Sobic003G278800 Sobic001G005100--Sobic002G033100 Sobic001G005100--Sobic002G162900 Sobic001G005100--Sobic001G403900 Sobic006G222200 Sobic006G222200 Sobic001G005100--Sobic006G222200 Sobic001G005100--Sobic010G000401 Sobic001G005100--Sobic001G221750 Sobic001G005100--Sobic004G089801 Sobic001G005100--Sobic004G055400 Sobic003G391800--Sobic010G000401 Sobic003G391800--Sobic004G045000 Sobic003G391800--Sobic001G005100 Sobic003G391800--Sobic002G268250 Sobic001G112300 Sobic001G112300 Sobic003G391800--Sobic001G112300 Sobic003G391800--Sobic003G278800 Sobic003G391800--Sobic002G162900 Sobic003G391800--Sobic001G403900 Sobic007G069750 Sobic007G069750 Sobic003G391800--Sobic007G069750
Octagon: transcription factors


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