Gene annotation
Transcriptome id Sobic.002G429900.1
Synonym Sb02g043960
Functional annotation PHD finger family protein, putative, expressed
UniProt A0A1W0W858
Pfam PF00628 PF16135
Panther DB PTHR24098 PTHR24098:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G58610 : PHD finger transcription factor, putative
RAP-DB (Rice) LOC_Os07g49290.1 : PHD finger family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS2D02G083000 , TraesCS2A02G085100
Populus -


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cDNA sequences
Sobic.002G429900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G394000 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.007G090466 - -
3 Sobic.001G377050 - -
4 Sobic.010G183700 CESA11 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.004G214500 plant protein of unknown function DUF869 domain containing protein, expressed -
6 Sobic.007G078200 cycloartenol synthase, putative, expressed K01853: cycloartenol synthase
7 Sobic.002G010150 - -
8 Sobic.002G007400 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.003G261700 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)
10 Sobic.010G222000 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
11 Sobic.001G116300 - -
12 Sobic.004G289200 OsSub43 - Putative Subtilisin homologue, expressed -
13 Sobic.003G051900 - -
14 Sobic.004G130980 - -
15 Sobic.001G405400 chloroplast unusual positioning protein, putative, expressed -
16 Sobic.010G218900 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
17 Sobic.006G175200 anthocyanin regulatory Lc protein, putative, expressed -
18 Sobic.007G202000 pumilio domain-containing protein PPD1, putative, expressed -
19 Sobic.001G266500 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.001G418300 - -


Gene co-expression network
sample Sobic002G429900 Sobic002G429900 Sobic002G394000 Sobic002G394000 Sobic002G429900--Sobic002G394000 Sobic007G090466 Sobic007G090466 Sobic002G429900--Sobic007G090466 Sobic001G377050 Sobic001G377050 Sobic002G429900--Sobic001G377050 Sobic010G183700 Sobic010G183700 Sobic002G429900--Sobic010G183700 Sobic004G214500 Sobic004G214500 Sobic002G429900--Sobic004G214500 Sobic007G078200 Sobic007G078200 Sobic002G429900--Sobic007G078200 Sobic002G010150 Sobic002G010150 Sobic002G429900--Sobic002G010150 Sobic002G007400 Sobic002G007400 Sobic002G429900--Sobic002G007400 Sobic003G261700 Sobic003G261700 Sobic002G429900--Sobic003G261700 Sobic002G394000--Sobic001G377050 Sobic002G394000--Sobic007G090466 Sobic002G394000--Sobic002G429900 Sobic002G394000--Sobic004G214500 Sobic002G394000--Sobic002G007400 Sobic002G394000--Sobic002G010150 Sobic004G289200 Sobic004G289200 Sobic002G394000--Sobic004G289200 Sobic002G394000--Sobic007G078200 Sobic001G116300 Sobic001G116300 Sobic002G394000--Sobic001G116300 Sobic007G090466--Sobic002G394000 Sobic007G090466--Sobic001G377050 Sobic007G090466--Sobic002G429900 Sobic007G090466--Sobic004G214500 Sobic007G090466--Sobic002G010150 Sobic007G090466--Sobic002G007400 Sobic007G090466--Sobic003G261700 Sobic007G090466--Sobic010G183700 Sobic007G090466--Sobic004G289200 Sobic001G377050--Sobic002G394000 Sobic001G377050--Sobic007G090466 Sobic001G377050--Sobic002G007400 Sobic001G377050--Sobic002G429900 Sobic001G377050--Sobic004G214500 Sobic001G377050--Sobic002G010150 Sobic001G377050--Sobic004G289200 Sobic001G266500 Sobic001G266500 Sobic001G377050--Sobic001G266500 Sobic001G377050--Sobic001G116300 Sobic010G183700--Sobic002G429900 Sobic010G183700--Sobic002G394000 Sobic010G183700--Sobic007G090466 Sobic010G222000 Sobic010G222000 Sobic010G183700--Sobic010G222000 Sobic010G183700--Sobic001G377050 Sobic004G130980 Sobic004G130980 Sobic010G183700--Sobic004G130980 Sobic010G183700--Sobic003G261700 Sobic001G405400 Sobic001G405400 Sobic010G183700--Sobic001G405400 Sobic006G234500 Sobic006G234500 Sobic010G183700--Sobic006G234500 Sobic004G214500--Sobic002G394000 Sobic004G214500--Sobic001G377050 Sobic004G214500--Sobic007G090466 Sobic004G214500--Sobic002G010150 Sobic004G214500--Sobic002G429900 Sobic004G214500--Sobic002G007400 Sobic002G394700 Sobic002G394700 Sobic004G214500--Sobic002G394700 Sobic004G214500--Sobic007G078200 Sobic010G108200 Sobic010G108200 Sobic004G214500--Sobic010G108200 Sobic004G153300 Sobic004G153300 Sobic007G078200--Sobic004G153300 Sobic007G078200--Sobic002G007400 Sobic007G078200--Sobic001G266500 Sobic007G078200--Sobic002G394000 Sobic007G078200--Sobic001G116300 Sobic007G078200--Sobic004G289200 Sobic007G078200--Sobic001G377050 Sobic007G078200--Sobic002G429900 Sobic001G303750 Sobic001G303750 Sobic007G078200--Sobic001G303750 Sobic002G010150--Sobic002G394000 Sobic002G010150--Sobic001G377050 Sobic002G010150--Sobic004G214500 Sobic002G010150--Sobic007G090466 Sobic002G010150--Sobic002G429900 Sobic002G010150--Sobic002G007400 Sobic005G135000 Sobic005G135000 Sobic002G010150--Sobic005G135000 Sobic003G414100 Sobic003G414100 Sobic002G010150--Sobic003G414100 Sobic010G232000 Sobic010G232000 Sobic002G010150--Sobic010G232000 Sobic003G179700 Sobic003G179700 Sobic002G007400--Sobic003G179700 Sobic003G206000 Sobic003G206000 Sobic002G007400--Sobic003G206000 Sobic007G073300 Sobic007G073300 Sobic002G007400--Sobic007G073300 Sobic003G239400 Sobic003G239400 Sobic002G007400--Sobic003G239400 Sobic007G064600 Sobic007G064600 Sobic002G007400--Sobic007G064600 Sobic010G200000 Sobic010G200000 Sobic002G007400--Sobic010G200000 Sobic003G206300 Sobic003G206300 Sobic002G007400--Sobic003G206300 Sobic001G332050 Sobic001G332050 Sobic002G007400--Sobic001G332050 Sobic003G141550 Sobic003G141550 Sobic003G261700--Sobic003G141550 Sobic010G206100 Sobic010G206100 Sobic003G261700--Sobic010G206100 Sobic009G150100 Sobic009G150100 Sobic003G261700--Sobic009G150100 Sobic005G082950 Sobic005G082950 Sobic003G261700--Sobic005G082950 Sobic007G100275 Sobic007G100275 Sobic003G261700--Sobic007G100275 Sobic003G353050 Sobic003G353050 Sobic003G261700--Sobic003G353050 Sobic003G058400 Sobic003G058400 Sobic003G261700--Sobic003G058400 Sobic008G085200 Sobic008G085200 Sobic003G261700--Sobic008G085200 Sobic002G333200 Sobic002G333200 Sobic003G261700--Sobic002G333200
Octagon: transcription factors


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