Gene annotation
Transcriptome id Sobic.010G218900.2
Synonym ASK2, SKP1B, Sb10g026480
Functional annotation SKP1-like protein 1B, putative, expressed
UniProt A0A1W0VU84
Pfam PF03931 PF01466
Panther DB PTHR11165
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT4G34210 : SKP1-like 11
RAP-DB (Rice) LOC_Os06g02360.1 : Skp1 family, dimerisation domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G222000 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
2 Sobic.002G394000 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.004G289200 OsSub43 - Putative Subtilisin homologue, expressed -
4 Sobic.002G010150 - -
5 Sobic.007G090466 - -
6 Sobic.001G377050 - -
7 Sobic.002G429900 PHD finger family protein, putative, expressed -
8 Sobic.004G214500 plant protein of unknown function DUF869 domain containing protein, expressed -
9 Sobic.004G130980 - -
10 Sobic.007G078200 cycloartenol synthase, putative, expressed K01853: cycloartenol synthase
11 Sobic.002G402100 LTPL60 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
12 Sobic.002G290600 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
13 Sobic.001G116300 - -
14 Sobic.005G026500 Rf1, mitochondrial precursor, putative, expressed -
15 Sobic.010G046200 NBS-LRR type disease resistance protein, putative, expressed -
16 Sobic.010G183700 CESA11 - cellulose synthase, expressed K10999: cellulose synthase A
17 Sobic.002G007400 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.001G209500 RIPER9 - Ripening-related family protein precursor, putative, expressed -
19 Sobic.007G052100 - -
20 Sobic.003G261700 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)


Gene co-expression network
sample Sobic010G218900 Sobic010G218900 Sobic010G222000 Sobic010G222000 Sobic010G218900--Sobic010G222000 Sobic002G394000 Sobic002G394000 Sobic010G218900--Sobic002G394000 Sobic004G289200 Sobic004G289200 Sobic010G218900--Sobic004G289200 Sobic002G010150 Sobic002G010150 Sobic010G218900--Sobic002G010150 Sobic007G090466 Sobic007G090466 Sobic010G218900--Sobic007G090466 Sobic001G377050 Sobic001G377050 Sobic010G218900--Sobic001G377050 Sobic002G429900 Sobic002G429900 Sobic010G218900--Sobic002G429900 Sobic004G214500 Sobic004G214500 Sobic010G218900--Sobic004G214500 Sobic004G130980 Sobic004G130980 Sobic010G218900--Sobic004G130980 Sobic007G003300 Sobic007G003300 Sobic010G222000--Sobic007G003300 Sobic006G037050 Sobic006G037050 Sobic010G222000--Sobic006G037050 Sobic005G080075 Sobic005G080075 Sobic010G222000--Sobic005G080075 Sobic001G100650 Sobic001G100650 Sobic010G222000--Sobic001G100650 Sobic010G064050 Sobic010G064050 Sobic010G222000--Sobic010G064050 Sobic003G008400 Sobic003G008400 Sobic010G222000--Sobic003G008400 Sobic002G082350 Sobic002G082350 Sobic010G222000--Sobic002G082350 Sobic003G254400 Sobic003G254400 Sobic010G222000--Sobic003G254400 Sobic008G191800 Sobic008G191800 Sobic010G222000--Sobic008G191800 Sobic002G394000--Sobic001G377050 Sobic002G394000--Sobic007G090466 Sobic002G394000--Sobic002G429900 Sobic002G394000--Sobic004G214500 Sobic002G007400 Sobic002G007400 Sobic002G394000--Sobic002G007400 Sobic002G394000--Sobic002G010150 Sobic002G394000--Sobic004G289200 Sobic007G078200 Sobic007G078200 Sobic002G394000--Sobic007G078200 Sobic001G116300 Sobic001G116300 Sobic002G394000--Sobic001G116300 Sobic004G289200--Sobic001G116300 Sobic004G289200--Sobic002G007400 Sobic001G303750 Sobic001G303750 Sobic004G289200--Sobic001G303750 Sobic002G129500 Sobic002G129500 Sobic004G289200--Sobic002G129500 Sobic005G208801 Sobic005G208801 Sobic004G289200--Sobic005G208801 Sobic006G251301 Sobic006G251301 Sobic004G289200--Sobic006G251301 Sobic008G101850 Sobic008G101850 Sobic004G289200--Sobic008G101850 Sobic003G162500 Sobic003G162500 Sobic004G289200--Sobic003G162500 Sobic003G206100 Sobic003G206100 Sobic004G289200--Sobic003G206100 Sobic002G010150--Sobic002G394000 Sobic002G010150--Sobic001G377050 Sobic002G010150--Sobic004G214500 Sobic002G010150--Sobic007G090466 Sobic002G010150--Sobic002G429900 Sobic002G010150--Sobic002G007400 Sobic005G135000 Sobic005G135000 Sobic002G010150--Sobic005G135000 Sobic003G414100 Sobic003G414100 Sobic002G010150--Sobic003G414100 Sobic010G232000 Sobic010G232000 Sobic002G010150--Sobic010G232000 Sobic007G090466--Sobic002G394000 Sobic007G090466--Sobic001G377050 Sobic007G090466--Sobic002G429900 Sobic007G090466--Sobic004G214500 Sobic007G090466--Sobic002G010150 Sobic007G090466--Sobic002G007400 Sobic003G261700 Sobic003G261700 Sobic007G090466--Sobic003G261700 Sobic010G183700 Sobic010G183700 Sobic007G090466--Sobic010G183700 Sobic007G090466--Sobic004G289200 Sobic001G377050--Sobic002G394000 Sobic001G377050--Sobic007G090466 Sobic001G377050--Sobic002G007400 Sobic001G377050--Sobic002G429900 Sobic001G377050--Sobic004G214500 Sobic001G377050--Sobic002G010150 Sobic001G377050--Sobic004G289200 Sobic001G266500 Sobic001G266500 Sobic001G377050--Sobic001G266500 Sobic001G377050--Sobic001G116300 Sobic002G429900--Sobic002G394000 Sobic002G429900--Sobic007G090466 Sobic002G429900--Sobic001G377050 Sobic002G429900--Sobic010G183700 Sobic002G429900--Sobic004G214500 Sobic002G429900--Sobic007G078200 Sobic002G429900--Sobic002G010150 Sobic002G429900--Sobic002G007400 Sobic002G429900--Sobic003G261700 Sobic004G214500--Sobic002G394000 Sobic004G214500--Sobic001G377050 Sobic004G214500--Sobic007G090466 Sobic004G214500--Sobic002G010150 Sobic004G214500--Sobic002G429900 Sobic004G214500--Sobic002G007400 Sobic002G394700 Sobic002G394700 Sobic004G214500--Sobic002G394700 Sobic004G214500--Sobic007G078200 Sobic010G108200 Sobic010G108200 Sobic004G214500--Sobic010G108200 Sobic010G046200 Sobic010G046200 Sobic004G130980--Sobic010G046200 Sobic007G172900 Sobic007G172900 Sobic004G130980--Sobic007G172900 Sobic004G056100 Sobic004G056100 Sobic004G130980--Sobic004G056100 Sobic003G256400 Sobic003G256400 Sobic004G130980--Sobic003G256400 Sobic010G237200 Sobic010G237200 Sobic004G130980--Sobic010G237200 Sobic004G130980--Sobic010G183700 Sobic001G386500 Sobic001G386500 Sobic004G130980--Sobic001G386500 Sobic003G384100 Sobic003G384100 Sobic004G130980--Sobic003G384100 Sobic004G130980--Sobic010G222000
Octagon: transcription factors


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