Gene annotation
Transcriptome id Sobic.001G479700.1
Synonym Sb01g044920
Functional annotation leucine-rich repeat family protein, putative, expressed
UniProt A0A1B6QQ40
Pfam PF12819
Panther DB PTHR27003 PTHR27003:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19230 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os03g08610.1 : leucine-rich repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053253
Brachypodium KQJ90518 , KQK23267
Barley HORVU5Hr1G068360.13 , HORVU5Hr1G068360.10 , HORVU5Hr1G068360.11 , HORVU5Hr1G068360.16 , HORVU5Hr1G068360.17 , HORVU5Hr1G068360.14 , HORVU5Hr1G068360.18 , HORVU5Hr1G068360.19 , HORVU5Hr1G068360.1 , HORVU5Hr1G068360.2 , HORVU5Hr1G068360.4 , HORVU5Hr1G068360.7 , HORVU5Hr1G068360.8
Wheat TraesCS5A02G238700 , TraesCS4B02G301300 , TraesCS5D02G245600 , TraesCS4A02G004000 , TraesCS5B02G237300 , TraesCS4D02G299600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G278100 serine/threonine-protein kinase, putative, expressed -
2 Sobic.003G114900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
3 Sobic.005G031700 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
4 Sobic.006G127800 armadillo/beta-catenin repeat family protein, putative, expressed -
5 Sobic.009G116100 conserved hypothetical protein -
6 Sobic.003G009600 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
7 Sobic.001G511100 expressed protein -
8 Sobic.001G024300 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.010G230200 myb-like DNA-binding domain containing protein, expressed K09422: transcription factor MYB, plant
10 Sobic.006G136700 GPI-anchored protein, putative, expressed -
11 Sobic.002G427500 pectinesterase, putative, expressed K01051: pectinesterase
12 Sobic.009G089000 ATCHX, putative, expressed -
13 Sobic.006G270800 EF hand family protein, putative, expressed -
14 Sobic.002G091300 pectinesterase inhibitor domain containing protein, expressed -
15 Sobic.003G197500 protein kinase domain containing protein, putative, expressed -
16 Sobic.008G043400 - -
17 Sobic.004G147700 pectinesterase inhibitor domain containing protein, putative, expressed -
18 Sobic.002G282600 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
19 Sobic.002G157900 - -
20 Sobic.001G332200 cysteine proteinase EP-B 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G479700 Sobic001G479700 Sobic001G278100 Sobic001G278100 Sobic001G479700--Sobic001G278100 Sobic003G114900 Sobic003G114900 Sobic001G479700--Sobic003G114900 Sobic005G031700 Sobic005G031700 Sobic001G479700--Sobic005G031700 Sobic006G127800 Sobic006G127800 Sobic001G479700--Sobic006G127800 Sobic009G116100 Sobic009G116100 Sobic001G479700--Sobic009G116100 Sobic003G009600 Sobic003G009600 Sobic001G479700--Sobic003G009600 Sobic001G511100 Sobic001G511100 Sobic001G479700--Sobic001G511100 Sobic001G024300 Sobic001G024300 Sobic001G479700--Sobic001G024300 Sobic010G230200 Sobic010G230200 Sobic001G479700--Sobic010G230200 Sobic006G136700 Sobic006G136700 Sobic001G278100--Sobic006G136700 Sobic001G278100--Sobic009G116100 Sobic001G278100--Sobic001G024300 Sobic001G278100--Sobic001G479700 Sobic001G278100--Sobic003G114900 Sobic001G278100--Sobic006G127800 Sobic002G157900 Sobic002G157900 Sobic001G278100--Sobic002G157900 Sobic001G332200 Sobic001G332200 Sobic001G278100--Sobic001G332200 Sobic001G278100--Sobic003G009600 Sobic003G114900--Sobic006G127800 Sobic002G427500 Sobic002G427500 Sobic003G114900--Sobic002G427500 Sobic003G197500 Sobic003G197500 Sobic003G114900--Sobic003G197500 Sobic006G270800 Sobic006G270800 Sobic003G114900--Sobic006G270800 Sobic003G114900--Sobic003G009600 Sobic008G043400 Sobic008G043400 Sobic003G114900--Sobic008G043400 Sobic009G089000 Sobic009G089000 Sobic003G114900--Sobic009G089000 Sobic003G114900--Sobic001G511100 Sobic003G114900--Sobic009G116100 Sobic005G031700--Sobic010G230200 Sobic005G031700--Sobic001G511100 Sobic005G031700--Sobic008G043400 Sobic003G027300 Sobic003G027300 Sobic005G031700--Sobic003G027300 Sobic004G147700 Sobic004G147700 Sobic005G031700--Sobic004G147700 Sobic005G031700--Sobic009G116100 Sobic004G318300 Sobic004G318300 Sobic005G031700--Sobic004G318300 Sobic002G091300 Sobic002G091300 Sobic005G031700--Sobic002G091300 Sobic002G282600 Sobic002G282600 Sobic005G031700--Sobic002G282600 Sobic006G127800--Sobic002G427500 Sobic006G127800--Sobic006G270800 Sobic006G127800--Sobic003G114900 Sobic006G127800--Sobic003G009600 Sobic006G127800--Sobic009G089000 Sobic003G147700 Sobic003G147700 Sobic006G127800--Sobic003G147700 Sobic005G122100 Sobic005G122100 Sobic006G127800--Sobic005G122100 Sobic003G232100 Sobic003G232100 Sobic006G127800--Sobic003G232100 Sobic006G127800--Sobic001G024300 Sobic009G116100--Sobic001G024300 Sobic009G116100--Sobic006G136700 Sobic009G116100--Sobic003G009600 Sobic009G116100--Sobic001G332200 Sobic009G116100--Sobic002G091300 Sobic009G116100--Sobic002G157900 Sobic002G417401 Sobic002G417401 Sobic009G116100--Sobic002G417401 Sobic009G116100--Sobic002G282600 Sobic009G116100--Sobic009G089000 Sobic003G009600--Sobic001G024300 Sobic003G009600--Sobic002G427500 Sobic003G009600--Sobic009G116100 Sobic003G009600--Sobic009G089000 Sobic007G222200 Sobic007G222200 Sobic003G009600--Sobic007G222200 Sobic003G009600--Sobic006G270800 Sobic003G009600--Sobic006G127800 Sobic009G090400 Sobic009G090400 Sobic003G009600--Sobic009G090400 Sobic003G009600--Sobic006G136700 Sobic001G511100--Sobic008G043400 Sobic001G511100--Sobic010G230200 Sobic001G511100--Sobic005G031700 Sobic001G511100--Sobic003G197500 Sobic001G511100--Sobic003G114900 Sobic001G511100--Sobic009G116100 Sobic001G511100--Sobic003G009600 Sobic001G511100--Sobic002G427500 Sobic001G511100--Sobic004G318300 Sobic001G024300--Sobic009G116100 Sobic001G024300--Sobic006G136700 Sobic001G024300--Sobic003G009600 Sobic001G024300--Sobic002G157900 Sobic001G024300--Sobic007G222200 Sobic001G024300--Sobic002G417401 Sobic001G024300--Sobic009G090400 Sobic001G024300--Sobic001G332200 Sobic001G024300--Sobic009G089000 Sobic010G230200--Sobic003G027300 Sobic010G230200--Sobic005G031700 Sobic010G230200--Sobic004G318300 Sobic010G230200--Sobic008G043400 Sobic010G230200--Sobic001G511100 Sobic009G087200 Sobic009G087200 Sobic010G230200--Sobic009G087200 Sobic010G230200--Sobic004G147700 Sobic010G230200--Sobic003G197500 Sobic010G230200--Sobic003G114900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.