Gene annotation
Transcriptome id Sobic.001G509300.1
Synonym Sb01g047550,
Functional annotation Tetratricopeptide repeat (TPR)-like superfamily protein (PubMedID : 26465154)
Tetratricopeptide repeat (TPR)-like superfamily protein( (PubMedID : 26759170,(PubMedID : 24597475)
expressed protein
UniProt C5WYW1
Pfam -
Panther DB PTHR26312 PTHR26312:SF89
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20190 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g04710.1 : expressed protein
MaizeGDB (Corn) Zm00025a000563
Brachypodium KQK23726
Barley HORVU4Hr1G084230.1 , HORVU4Hr1G084230.3 , HORVU4Hr1G084230.2 , HORVU4Hr1G084230.4
Wheat TraesCS5A02G512000 , TraesCS4B02G342900
Populus -


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cDNA sequences
Sobic.001G509300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G153500 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.006G164000 expressed protein -
3 Sobic.004G167700 pectinesterase inhibitor domain containing protein, putative, expressed -
4 Sobic.008G065932 - -
5 Sobic.007G182500 bZIP family transcription factor, putative, expressed -
6 Sobic.007G018000 expansin precursor, putative, expressed -
7 Sobic.009G031600 expressed protein -
8 Sobic.007G109400 response regulator receiver domain containing protein, expressed K14492: two-component response regulator ARR-A family
9 Sobic.002G061200 OsFBX237 - F-box domain containing protein, expressed -
10 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.010G212700 tetraspanin family protein, putative, expressed -
12 Sobic.009G039500 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
13 Sobic.003G438300 - -
14 Sobic.003G271600 Cupin domain containing protein, expressed -
15 Sobic.009G060501 - -
16 Sobic.005G109800 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
17 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
18 Sobic.009G013400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
19 Sobic.004G064000 WAX2, putative, expressed -
20 Sobic.004G295500 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G509300 Sobic001G509300 Sobic003G153500 Sobic003G153500 Sobic001G509300--Sobic003G153500 Sobic006G164000 Sobic006G164000 Sobic001G509300--Sobic006G164000 Sobic004G167700 Sobic004G167700 Sobic001G509300--Sobic004G167700 Sobic008G065932 Sobic008G065932 Sobic001G509300--Sobic008G065932 Sobic007G182500 Sobic007G182500 Sobic001G509300--Sobic007G182500 Sobic007G018000 Sobic007G018000 Sobic001G509300--Sobic007G018000 Sobic009G031600 Sobic009G031600 Sobic001G509300--Sobic009G031600 Sobic007G109400 Sobic007G109400 Sobic001G509300--Sobic007G109400 Sobic002G061200 Sobic002G061200 Sobic001G509300--Sobic002G061200 Sobic009G013400 Sobic009G013400 Sobic003G153500--Sobic009G013400 Sobic008G088450 Sobic008G088450 Sobic003G153500--Sobic008G088450 Sobic009G227000 Sobic009G227000 Sobic003G153500--Sobic009G227000 Sobic009G007500 Sobic009G007500 Sobic003G153500--Sobic009G007500 Sobic010G227400 Sobic010G227400 Sobic003G153500--Sobic010G227400 Sobic001G170500 Sobic001G170500 Sobic003G153500--Sobic001G170500 Sobic005G056100 Sobic005G056100 Sobic003G153500--Sobic005G056100 Sobic010G109700 Sobic010G109700 Sobic003G153500--Sobic010G109700 Sobic001G096500 Sobic001G096500 Sobic003G153500--Sobic001G096500 Sobic003G358200 Sobic003G358200 Sobic006G164000--Sobic003G358200 Sobic004G155300 Sobic004G155300 Sobic006G164000--Sobic004G155300 Sobic005G084900 Sobic005G084900 Sobic006G164000--Sobic005G084900 Sobic001G419700 Sobic001G419700 Sobic006G164000--Sobic001G419700 Sobic002G420800 Sobic002G420800 Sobic006G164000--Sobic002G420800 Sobic003G159500 Sobic003G159500 Sobic006G164000--Sobic003G159500 Sobic004G345100 Sobic004G345100 Sobic006G164000--Sobic004G345100 Sobic002G400400 Sobic002G400400 Sobic006G164000--Sobic002G400400 Sobic006G164000--Sobic001G170500 Sobic010G069800 Sobic010G069800 Sobic004G167700--Sobic010G069800 Sobic010G088500 Sobic010G088500 Sobic004G167700--Sobic010G088500 Sobic001G399600 Sobic001G399600 Sobic004G167700--Sobic001G399600 Sobic004G167700--Sobic001G509300 Sobic005G152932 Sobic005G152932 Sobic004G167700--Sobic005G152932 Sobic004G028700 Sobic004G028700 Sobic004G167700--Sobic004G028700 Sobic001G141700 Sobic001G141700 Sobic004G167700--Sobic001G141700 Sobic006G066400 Sobic006G066400 Sobic004G167700--Sobic006G066400 Sobic004G167700--Sobic009G013400 Sobic009G043400 Sobic009G043400 Sobic008G065932--Sobic009G043400 Sobic006G046300 Sobic006G046300 Sobic008G065932--Sobic006G046300 Sobic006G143300 Sobic006G143300 Sobic008G065932--Sobic006G143300 Sobic001G278700 Sobic001G278700 Sobic008G065932--Sobic001G278700 Sobic002G349000 Sobic002G349000 Sobic008G065932--Sobic002G349000 Sobic001G273000 Sobic001G273000 Sobic008G065932--Sobic001G273000 Sobic006G140300 Sobic006G140300 Sobic008G065932--Sobic006G140300 Sobic008G176300 Sobic008G176300 Sobic008G065932--Sobic008G176300 Sobic003G217500 Sobic003G217500 Sobic008G065932--Sobic003G217500 Sobic007G182500--Sobic001G170500 Sobic007G182500--Sobic007G018000 Sobic009G025100 Sobic009G025100 Sobic007G182500--Sobic009G025100 Sobic004G274500 Sobic004G274500 Sobic007G182500--Sobic004G274500 Sobic004G250600 Sobic004G250600 Sobic007G182500--Sobic004G250600 Sobic003G304500 Sobic003G304500 Sobic007G182500--Sobic003G304500 Sobic007G208200 Sobic007G208200 Sobic007G182500--Sobic007G208200 Sobic004G254400 Sobic004G254400 Sobic007G182500--Sobic004G254400 Sobic001G368900 Sobic001G368900 Sobic007G182500--Sobic001G368900 Sobic005G064200 Sobic005G064200 Sobic007G018000--Sobic005G064200 Sobic007G018000--Sobic007G182500 Sobic007G018000--Sobic004G274500 Sobic003G438300 Sobic003G438300 Sobic007G018000--Sobic003G438300 Sobic007G018000--Sobic007G109400 Sobic007G018000--Sobic002G061200 Sobic010G195600 Sobic010G195600 Sobic007G018000--Sobic010G195600 Sobic009G039500 Sobic009G039500 Sobic007G018000--Sobic009G039500 Sobic005G109800 Sobic005G109800 Sobic007G018000--Sobic005G109800 Sobic003G324300 Sobic003G324300 Sobic009G031600--Sobic003G324300 Sobic009G031600--Sobic002G420800 Sobic001G067000 Sobic001G067000 Sobic009G031600--Sobic001G067000 Sobic009G031600--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic009G031600--Sobic001G050900 Sobic009G031600--Sobic003G358200 Sobic001G437300 Sobic001G437300 Sobic009G031600--Sobic001G437300 Sobic007G128400 Sobic007G128400 Sobic009G031600--Sobic007G128400 Sobic004G102900 Sobic004G102900 Sobic009G031600--Sobic004G102900 Sobic007G109400--Sobic002G061200 Sobic007G109400--Sobic009G039500 Sobic007G109400--Sobic003G438300 Sobic007G109400--Sobic005G109800 Sobic007G109400--Sobic010G195600 Sobic005G109900 Sobic005G109900 Sobic007G109400--Sobic005G109900 Sobic005G174700 Sobic005G174700 Sobic007G109400--Sobic005G174700 Sobic005G174600 Sobic005G174600 Sobic007G109400--Sobic005G174600 Sobic005G051700 Sobic005G051700 Sobic007G109400--Sobic005G051700 Sobic002G061200--Sobic007G109400 Sobic002G061200--Sobic009G039500 Sobic002G061200--Sobic005G109800 Sobic002G061200--Sobic003G438300 Sobic002G061200--Sobic005G109900 Sobic002G061200--Sobic005G174700 Sobic002G061200--Sobic005G174600 Sobic002G061200--Sobic010G195600 Sobic009G039700 Sobic009G039700 Sobic002G061200--Sobic009G039700
Octagon: transcription factors


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