Gene annotation
Transcriptome id Sobic.002G064500.1
Synonym Sb02g005380, DXS, DXPS2, DEF, CLA, CLA1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Protein 1-deoxy-D-xylulose-5-phosphate synthase (Os) (PubMedID : 27208977)
transketolase, putative, expressed
UniProt C5XBX3
Pfam PF02780 PF02779 PF13292
Panther DB PTHR11624 PTHR11624:SF83
NCBI CDD -
KEGG Orthology K01662; 1-deoxy-D-xylulose-5-phosphate synthase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity GO:0016114terpenoid biosynthetic process GO:00086611-deoxy-D-xylulose-5-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT4G15560 : Deoxyxylulose-5-phosphate synthase
RAP-DB (Rice) LOC_Os07g09190.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a043672 , Zm00025a045275
Brachypodium KQK06295 , KQK20495
Barley HORVU1Hr1G084900.10 , HORVU1Hr1G084900.11 , HORVU1Hr1G084900.8 , HORVU1Hr1G084900.7 , HORVU1Hr1G084900.4 , HORVU1Hr1G084900.5 , HORVU1Hr1G084900.3 , HORVU1Hr1G084900.9 , HORVU2Hr1G126150.3 , HORVU2Hr1G126150.2 , HORVU2Hr1G126150.4
Wheat TraesCS1D02G255100 , TraesCS1A02G384300 , TraesCS2D02G575800 , TraesCS1B02G266500 , TraesCS2A02G565400 , TraesCS1D02G392500 , TraesCS1A02G255800 , TraesCS2B02G626400 , TraesCS1B02G411100 , TraesCS2B02G626400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.008G162201 - K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.009G241300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.005G226100 ZOS11-10 - C2H2 zinc finger protein, expressed -
5 Sobic.006G045000 drought-induced protein 1, putative, expressed -
6 Sobic.001G136300 nodulin family protein, putative, expressed -
7 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
8 Sobic.008G181801 - -
9 Sobic.K044407 - -
10 Sobic.005G133166 - -
11 Sobic.005G082700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
12 Sobic.001G381300 WRKY79, expressed -
13 Sobic.010G224600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR26 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
14 Sobic.009G216050 - -
15 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.002G216500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.009G241500 expressed protein -
18 Sobic.004G209500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G310500 DUF567 domain containing protein, putative, expressed -
20 Sobic.005G193600 3 Ketoacyl CoA synthetase 2 KCS2 (fatty acid elongase) (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase


Gene co-expression network
sample Sobic002G064500 Sobic002G064500 Sobic009G241400 Sobic009G241400 Sobic002G064500--Sobic009G241400 Sobic008G162201 Sobic008G162201 Sobic002G064500--Sobic008G162201 Sobic009G241300 Sobic009G241300 Sobic002G064500--Sobic009G241300 Sobic005G226100 Sobic005G226100 Sobic002G064500--Sobic005G226100 Sobic006G045000 Sobic006G045000 Sobic002G064500--Sobic006G045000 Sobic001G136300 Sobic001G136300 Sobic002G064500--Sobic001G136300 Sobic001G012000 Sobic001G012000 Sobic002G064500--Sobic001G012000 Sobic008G181801 Sobic008G181801 Sobic002G064500--Sobic008G181801 SobicK044407 SobicK044407 Sobic002G064500--SobicK044407 Sobic009G241400--Sobic009G241300 Sobic006G168000 Sobic006G168000 Sobic009G241400--Sobic006G168000 Sobic009G241400--Sobic008G162201 Sobic009G241400--Sobic001G136300 Sobic007G135000 Sobic007G135000 Sobic009G241400--Sobic007G135000 Sobic005G082700 Sobic005G082700 Sobic009G241400--Sobic005G082700 Sobic006G246200 Sobic006G246200 Sobic009G241400--Sobic006G246200 Sobic009G241500 Sobic009G241500 Sobic009G241400--Sobic009G241500 Sobic005G133166 Sobic005G133166 Sobic009G241400--Sobic005G133166 Sobic008G162201--Sobic001G136300 Sobic008G162201--Sobic006G246200 Sobic007G157100 Sobic007G157100 Sobic008G162201--Sobic007G157100 Sobic008G162201--Sobic009G241400 Sobic008G162201--Sobic006G168000 Sobic008G162201--Sobic009G241500 Sobic008G162201--Sobic005G082700 Sobic008G162201--Sobic005G133166 Sobic005G085500 Sobic005G085500 Sobic008G162201--Sobic005G085500 Sobic009G241300--Sobic009G241400 Sobic009G241300--Sobic007G135000 Sobic003G097100 Sobic003G097100 Sobic009G241300--Sobic003G097100 Sobic010G044700 Sobic010G044700 Sobic009G241300--Sobic010G044700 Sobic009G241300--Sobic008G162201 Sobic001G469500 Sobic001G469500 Sobic009G241300--Sobic001G469500 Sobic009G241300--Sobic006G168000 Sobic007G001100 Sobic007G001100 Sobic009G241300--Sobic007G001100 Sobic009G241300--Sobic002G064500 Sobic005G226100--Sobic008G181801 Sobic005G226100--Sobic009G241500 Sobic003G037100 Sobic003G037100 Sobic005G226100--Sobic003G037100 Sobic001G381300 Sobic001G381300 Sobic005G226100--Sobic001G381300 Sobic002G269032 Sobic002G269032 Sobic005G226100--Sobic002G269032 Sobic009G121600 Sobic009G121600 Sobic005G226100--Sobic009G121600 Sobic005G226100--Sobic005G082700 Sobic005G226100--Sobic006G246200 Sobic001G259500 Sobic001G259500 Sobic005G226100--Sobic001G259500 Sobic006G045000--SobicK044407 Sobic006G045000--Sobic001G012000 Sobic001G056400 Sobic001G056400 Sobic006G045000--Sobic001G056400 Sobic006G045000--Sobic008G181801 Sobic002G423600 Sobic002G423600 Sobic006G045000--Sobic002G423600 Sobic003G378301 Sobic003G378301 Sobic006G045000--Sobic003G378301 Sobic005G182701 Sobic005G182701 Sobic006G045000--Sobic005G182701 Sobic001G201800 Sobic001G201800 Sobic006G045000--Sobic001G201800 Sobic004G217700 Sobic004G217700 Sobic006G045000--Sobic004G217700 Sobic001G136300--Sobic006G246200 Sobic001G136300--Sobic005G082700 Sobic001G136300--Sobic009G241500 Sobic006G113900 Sobic006G113900 Sobic001G136300--Sobic006G113900 Sobic001G136300--Sobic007G157100 Sobic001G136300--Sobic001G381300 Sobic001G146500 Sobic001G146500 Sobic001G136300--Sobic001G146500 Sobic001G136300--Sobic005G226100 Sobic001G136300--Sobic008G162201 Sobic001G012000--SobicK044407 Sobic001G012000--Sobic001G056400 Sobic001G012000--Sobic006G045000 Sobic001G012000--Sobic005G182701 Sobic009G115300 Sobic009G115300 Sobic001G012000--Sobic009G115300 Sobic001G012000--Sobic002G423600 Sobic001G012000--Sobic008G181801 Sobic003G310200 Sobic003G310200 Sobic001G012000--Sobic003G310200 Sobic009G115400 Sobic009G115400 Sobic001G012000--Sobic009G115400 Sobic008G181801--SobicK044407 Sobic008G181801--Sobic009G241500 Sobic008G181801--Sobic001G012000 Sobic008G181801--Sobic006G045000 Sobic008G181801--Sobic005G226100 Sobic008G181801--Sobic005G085500 Sobic008G181801--Sobic003G310200 Sobic008G181801--Sobic005G082700 Sobic008G181801--Sobic003G037100 SobicK044407--Sobic001G012000 SobicK044407--Sobic001G056400 SobicK044407--Sobic008G181801 SobicK044407--Sobic006G045000 SobicK044407--Sobic003G378301 SobicK044407--Sobic003G310200 SobicK044407--Sobic005G182701 SobicK044407--Sobic002G423600 Sobic007G055600 Sobic007G055600 SobicK044407--Sobic007G055600
Octagon: transcription factors


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