Gene annotation
Transcriptome id Sobic.002G182900.2
Synonym Sb02g023090
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W4X9
Pfam PF05553
Panther DB PTHR33098 PTHR33098:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26110 : Protein of unknown function (DUF761)
RAP-DB (Rice) LOC_Os09g19970.1 : expressed protein
MaizeGDB (Corn) Zm00025a046692
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G253950 - -
2 Sobic.002G182800 expressed protein -
3 Sobic.009G216900 down-regulated TF in developmental senescence(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.003G040800 WRKY102, expressed -
5 Sobic.003G233900 - -
6 Sobic.009G128300 CUE domain containing protein, expressed -
7 Sobic.006G050550 - -
8 Sobic.010G085400 down-regulated TF in developmental senescence(PubMedID : 27586543)@OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
9 Sobic.003G227600 CPuORF29 - conserved peptide uORF-containing transcript, expressed -
10 Sobic.010G245900 - -
11 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
12 Sobic.001G509400 - -
13 Sobic.001G075101 - -
14 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
15 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
16 Sobic.004G283201 - -
17 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
18 Sobic.004G283300 AP2 domain containing protein, expressed -
19 Sobic.005G087800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
20 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G182900 Sobic002G182900 Sobic009G253950 Sobic009G253950 Sobic002G182900--Sobic009G253950 Sobic002G182800 Sobic002G182800 Sobic002G182900--Sobic002G182800 Sobic009G216900 Sobic009G216900 Sobic002G182900--Sobic009G216900 Sobic003G040800 Sobic003G040800 Sobic002G182900--Sobic003G040800 Sobic003G233900 Sobic003G233900 Sobic002G182900--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic002G182900--Sobic009G128300 Sobic006G050550 Sobic006G050550 Sobic002G182900--Sobic006G050550 Sobic010G085400 Sobic010G085400 Sobic002G182900--Sobic010G085400 Sobic003G227600 Sobic003G227600 Sobic002G182900--Sobic003G227600 Sobic009G253950--Sobic003G233900 Sobic009G253950--Sobic003G040800 Sobic003G079800 Sobic003G079800 Sobic009G253950--Sobic003G079800 Sobic009G253950--Sobic009G216900 Sobic009G253950--Sobic009G128300 Sobic009G253950--Sobic002G182800 Sobic009G000700 Sobic009G000700 Sobic009G253950--Sobic009G000700 Sobic004G285100 Sobic004G285100 Sobic009G253950--Sobic004G285100 Sobic008G044750 Sobic008G044750 Sobic009G253950--Sobic008G044750 Sobic002G182800--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic002G182800--Sobic001G509400 Sobic002G182800--Sobic003G233900 Sobic001G075101 Sobic001G075101 Sobic002G182800--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic002G182800--Sobic002G331450 Sobic002G182800--Sobic003G227600 Sobic002G182800--Sobic003G040800 Sobic002G182800--Sobic010G085400 Sobic002G342100 Sobic002G342100 Sobic002G182800--Sobic002G342100 Sobic009G216900--Sobic003G227600 Sobic009G216900--Sobic003G233900 Sobic009G216900--Sobic009G128300 Sobic009G216900--Sobic003G040800 Sobic009G216900--Sobic002G182800 Sobic009G216900--Sobic002G342100 Sobic009G216900--Sobic001G509400 Sobic009G216900--Sobic004G285100 Sobic009G216900--Sobic003G079800 Sobic001G106000 Sobic001G106000 Sobic003G040800--Sobic001G106000 Sobic003G040800--Sobic003G233900 Sobic003G040800--Sobic002G182800 Sobic003G040800--Sobic009G128300 Sobic003G040800--Sobic003G227600 Sobic003G040800--Sobic009G216900 Sobic003G040800--Sobic004G285100 Sobic003G017200 Sobic003G017200 Sobic003G040800--Sobic003G017200 Sobic003G040800--Sobic001G509400 Sobic003G233900--Sobic009G128300 Sobic003G233900--Sobic003G227600 Sobic003G233900--Sobic002G182800 Sobic003G233900--Sobic003G040800 Sobic003G233900--Sobic009G000700 Sobic003G233900--Sobic009G216900 Sobic004G257350 Sobic004G257350 Sobic003G233900--Sobic004G257350 Sobic003G066900 Sobic003G066900 Sobic003G233900--Sobic003G066900 Sobic003G233900--Sobic004G285100 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic009G128300--Sobic008G044750 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic005G181600 Sobic005G181600 Sobic006G050550--Sobic005G181600 Sobic006G050550--Sobic002G182900 Sobic005G230100 Sobic005G230100 Sobic006G050550--Sobic005G230100 Sobic010G245900 Sobic010G245900 Sobic006G050550--Sobic010G245900 Sobic003G267300 Sobic003G267300 Sobic006G050550--Sobic003G267300 Sobic006G050550--Sobic009G253950 Sobic008G016850 Sobic008G016850 Sobic006G050550--Sobic008G016850 Sobic001G134000 Sobic001G134000 Sobic006G050550--Sobic001G134000 Sobic003G334500 Sobic003G334500 Sobic006G050550--Sobic003G334500 Sobic010G085400--Sobic002G182800 Sobic010G085400--Sobic002G331450 Sobic010G085400--Sobic009G128300 Sobic010G085400--Sobic003G040800 Sobic002G110200 Sobic002G110200 Sobic010G085400--Sobic002G110200 Sobic002G013900 Sobic002G013900 Sobic010G085400--Sobic002G013900 Sobic004G211301 Sobic004G211301 Sobic010G085400--Sobic004G211301 Sobic010G085400--Sobic003G233900 Sobic007G169600 Sobic007G169600 Sobic010G085400--Sobic007G169600 Sobic003G227600--Sobic009G128300 Sobic003G227600--Sobic009G216900 Sobic003G227600--Sobic003G233900 Sobic003G227600--Sobic002G182800 Sobic003G227600--Sobic003G040800 Sobic003G227600--Sobic002G342100 Sobic003G227600--Sobic001G509400 Sobic003G227600--Sobic001G075101 Sobic003G227600--Sobic002G331450
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.