Gene annotation
Transcriptome id Sobic.002G225600.2
Synonym AMY1, ATAMY1
Functional annotation alpha-amylase precursor, putative, expressed
UniProt C6JSS1 , C5X2B1
Pfam PF00128 PF07821
Panther DB PTHR10357 PTHR10357:SF153
NCBI CDD KOG0471; Alpha-amylase
KEGG Orthology K01176; AMY, amyA, alpha-amylase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0005509calcium ion binding GO:0004556alpha-amylase activity


Orthologs (automatic annotation)
TAIR AT4G25000 : alpha-amylase-like
RAP-DB (Rice) LOC_Os09g28420.1 : alpha-amylase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022221 , Zm00025a046841 , Zm00025a014064 , Zm00025a005424
Brachypodium KQK17525 , KQJ90515 , KQK01755
Barley HORVU7Hr1G091240.1 , HORVU7Hr1G091250.8 , HORVU7Hr1G091250.2 , HORVU7Hr1G091250.3 , HORVU7Hr1G091250.1 , HORVU7Hr1G091250.6 , HORVU7Hr1G091250.7 , HORVU7Hr1G091250.4 , HORVU7Hr1G091250.5 , HORVU5Hr1G068350.1 , HORVU5Hr1G068350.2 , HORVU6Hr1G080790.1 , HORVU6Hr1G080790.2
Wheat TraesCS4D02G284400 , TraesCS7D02G380500 , TraesCS5B02G236600 , TraesCS7A02G383900 , TraesCS7A02G384000 , TraesCS6B02G364800 , TraesCS5D02G245000 , TraesCS7B02G286100 , TraesCS7A02G383200 , TraesCS4B02G285600 , TraesCS4B02G285400 , TraesCS7D02G380400 , TraesCS7B02G286700 , TraesCS7B02G286000 , TraesCS7D02G379700 , TraesCS5A02G238100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
2 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
3 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
4 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
5 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
6 Sobic.001G362001 Probable serine/threonineprotein kinase PBL15(PubMedID : 31721651) -
7 Sobic.007G089300 TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed -
8 Sobic.009G241500 expressed protein -
9 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G052500 - -
11 Sobic.002G269032 - -
12 Sobic.006G246200 protein kinase, putative, expressed -
13 Sobic.003G138100 tetratricopeptide repeat, putative, expressed -
14 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
15 Sobic.001G544000 nuclear transport factor, putative, expressed -
16 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
17 Sobic.008G183300 thaumatin, putative, expressed -
18 Sobic.006G113400 heavy metal associated domain containing protein, expressed -
19 Sobic.005G082700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
20 Sobic.004G160300 expressed protein -


Gene co-expression network
sample Sobic002G225600 Sobic002G225600 Sobic001G259500 Sobic001G259500 Sobic002G225600--Sobic001G259500 Sobic001G362001 Sobic001G362001 Sobic002G225600--Sobic001G362001 Sobic007G089300 Sobic007G089300 Sobic002G225600--Sobic007G089300 Sobic009G241500 Sobic009G241500 Sobic002G225600--Sobic009G241500 Sobic003G037100 Sobic003G037100 Sobic002G225600--Sobic003G037100 Sobic001G259500--Sobic001G259500 Sobic001G259500--Sobic009G241500 Sobic002G269032 Sobic002G269032 Sobic001G259500--Sobic002G269032 Sobic004G052500 Sobic004G052500 Sobic001G259500--Sobic004G052500 Sobic001G146500 Sobic001G146500 Sobic001G259500--Sobic001G146500 Sobic003G138100 Sobic003G138100 Sobic001G259500--Sobic003G138100 Sobic006G246200 Sobic006G246200 Sobic001G362001--Sobic006G246200 Sobic001G362001--Sobic007G089300 Sobic009G121600 Sobic009G121600 Sobic001G362001--Sobic009G121600 Sobic005G226100 Sobic005G226100 Sobic001G362001--Sobic005G226100 Sobic008G181801 Sobic008G181801 Sobic001G362001--Sobic008G181801 Sobic001G381300 Sobic001G381300 Sobic001G362001--Sobic001G381300 Sobic001G362001--Sobic009G241500 Sobic005G082700 Sobic005G082700 Sobic001G362001--Sobic005G082700 Sobic005G085500 Sobic005G085500 Sobic001G362001--Sobic005G085500 Sobic007G089300--Sobic001G362001 Sobic006G060800 Sobic006G060800 Sobic007G089300--Sobic006G060800 Sobic003G310200 Sobic003G310200 Sobic007G089300--Sobic003G310200 Sobic002G041800 Sobic002G041800 Sobic007G089300--Sobic002G041800 Sobic008G060300 Sobic008G060300 Sobic007G089300--Sobic008G060300 Sobic003G366100 Sobic003G366100 Sobic007G089300--Sobic003G366100 Sobic010G130800 Sobic010G130800 Sobic007G089300--Sobic010G130800 Sobic005G193600 Sobic005G193600 Sobic007G089300--Sobic005G193600 Sobic007G089300--Sobic008G181801 Sobic009G241500--Sobic008G181801 Sobic009G241500--Sobic005G082700 Sobic009G241500--Sobic005G226100 Sobic009G241500--Sobic006G246200 Sobic009G241500--Sobic001G259500 Sobic003G037100--Sobic005G226100 Sobic003G037100--Sobic002G269032 Sobic003G037100--Sobic008G181801 Sobic003G037100--Sobic009G241500 Sobic003G037100--Sobic001G259500
Octagon: transcription factors


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