Gene annotation
| Transcriptome id | Sobic.002G255700.1 |
|---|---|
| Synonym | Sb02g029090 |
| Functional annotation | alcohol dehydrogenase GroES-like domain containing protein, expressed |
| UniProt | C5X4N2 |
| Pfam | PF08240 PF13602 |
| Panther DB | PTHR11695 PTHR11695:SF548 |
| NCBI CDD | KOG1198; Zinc-binding oxidoreductase |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0008270zinc ion binding |
Orthologs (automatic annotation)
| TAIR | AT4G13010 : Oxidoreductase, zinc-binding dehydrogenase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g32570.1 : alcohol dehydrogenase GroES-like domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a014289 , Zm00025a047549 |
| Brachypodium | KQJ90855 , KQJ90893 |
| Barley | HORVU5Hr1G075540.4 , HORVU5Hr1G075540.2 , HORVU5Hr1G075540.3 , HORVU5Hr1G034150.2 , HORVU5Hr1G034150.3 , HORVU5Hr1G034150.1 , HORVU5Hr1G034150.6 , HORVU5Hr1G034150.7 , HORVU5Hr1G034150.4 , HORVU5Hr1G034150.5 , HORVU5Hr1G075550.11 , HORVU5Hr1G075550.5 , HORVU5Hr1G075550.4 , HORVU5Hr1G075550.7 , HORVU5Hr1G075550.6 , HORVU5Hr1G075550.8 |
| Wheat | TraesCS5A02G280700 , TraesCS5B02G279700 , TraesCS5B02G279900 , TraesCS2A02G277700 , TraesCS5A02G280800 , TraesCS2B02G295200 , TraesCS5D02G287300 , TraesCS5D02G287300 , TraesCS2D02G276700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G101500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dirigent, putative, expressed | - |
| 2 | Sobic.004G252400 | ASC1-like protein 2 (Os)(PubMedID : 27208977)@ASC1, putative, expressed | K04710: CERS1_2_3_4, ceramide synthetase |
| 3 | Sobic.006G039700 | expressed protein | - |
| 4 | Sobic.003G436800 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 5 | Sobic.001G243500 | glycine-rich cell wall structural protein 2 precursor, putative, expressed | - |
| 6 | Sobic.009G055100 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 7 | Sobic.009G040900 | sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed | - |
| 8 | Sobic.001G243400 | glycine-rich cell wall structural protein 2 precursor, putative, expressed | - |
| 9 | Sobic.008G123100 | calmodulin binding protein, putative, expressed | - |
| 10 | Sobic.001G100700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed | - |
| 11 | Sobic.009G158700 | - | - |
| 12 | Sobic.001G248500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed | K00383: GSR, glutathione reductase (NADPH) |
| 13 | Sobic.002G346100 | - | - |
| 14 | Sobic.005G213200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed | - |
| 15 | Sobic.004G273400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed | - |
| 16 | Sobic.006G012900 | sterol 3-beta-glucosyltransferase, putative, expressed | K05841: sterol 3beta-glucosyltransferase |
| 17 | Sobic.010G209900 | phospholipase D. Active site motif family protein, expressed | K16860: phospholipase D3/4 |
| 18 | Sobic.002G002900 | - | - |
| 19 | Sobic.001G009900 | pantoate--beta-alanine ligase, putative, expressed | K01918: pantoate--beta-alanine ligase |
| 20 | Sobic.002G018500 | - | - |
Gene co-expression network
Octagon: transcription factors
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