Gene annotation
Transcriptome id Sobic.004G252400.2,Sobic.004G252400.3
Synonym LAG13, Sb04g029190
Functional annotation ASC1-like protein 2 (Os) (PubMedID : 27208977)
ASC1, putative, expressed
UniProt C5XZE8
Pfam PF03798
Panther DB PTHR12560 PTHR12560:SF13
NCBI CDD KOG1607; Protein transporter of the TRAM (translocating chain-associating membrane) superfamily
KEGG Orthology K04710; CERS1_2_3_4, ceramide synthetase
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT1G13580 : LAG1 longevity assurance homolog 3
RAP-DB (Rice) LOC_Os02g49590.1 : ASC1, putative, expressed
MaizeGDB (Corn) Zm00025a021889
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G233100 expressed protein -
2 Sobic.007G161400 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
K13348: protein Mpv17
3 Sobic.003G436800 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
5 Sobic.005G043000 heat shock protein-related, putative, expressed -
6 Sobic.002G196100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.010G071900 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
8 Sobic.002G312900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
9 Sobic.010G272300 cysteine-rich receptor-like protein kinase 28 precursor, putative, expressed -
10 Sobic.003G280400 hexokinase, putative, expressed K00844: hexokinase
11 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
12 Sobic.005G092900 - -
13 Sobic.004G204900 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
14 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.006G039700 expressed protein -
16 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
17 Sobic.009G040900 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
18 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
19 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G297000 glycoprotein, putative, expressed -


Gene co-expression network
sample Sobic004G252400 Sobic004G252400 Sobic002G233100 Sobic002G233100 Sobic004G252400--Sobic002G233100 Sobic007G161400 Sobic007G161400 Sobic004G252400--Sobic007G161400 Sobic003G436800 Sobic003G436800 Sobic004G252400--Sobic003G436800 Sobic006G059700 Sobic006G059700 Sobic004G252400--Sobic006G059700 Sobic005G043000 Sobic005G043000 Sobic004G252400--Sobic005G043000 Sobic002G196100 Sobic002G196100 Sobic004G252400--Sobic002G196100 Sobic010G071900 Sobic010G071900 Sobic004G252400--Sobic010G071900 Sobic002G312900 Sobic002G312900 Sobic004G252400--Sobic002G312900 Sobic010G272300 Sobic010G272300 Sobic004G252400--Sobic010G272300 Sobic004G001000 Sobic004G001000 Sobic002G233100--Sobic004G001000 Sobic003G366600 Sobic003G366600 Sobic002G233100--Sobic003G366600 Sobic003G184100 Sobic003G184100 Sobic002G233100--Sobic003G184100 Sobic002G233100--Sobic002G312900 Sobic002G233100--Sobic005G043000 Sobic002G233100--Sobic002G196100 Sobic003G404600 Sobic003G404600 Sobic002G233100--Sobic003G404600 Sobic002G233100--Sobic007G161400 Sobic002G233100--Sobic006G059700 Sobic003G280400 Sobic003G280400 Sobic007G161400--Sobic003G280400 Sobic008G128900 Sobic008G128900 Sobic007G161400--Sobic008G128900 Sobic007G161400--Sobic006G059700 Sobic004G042000 Sobic004G042000 Sobic007G161400--Sobic004G042000 Sobic007G161400--Sobic005G043000 Sobic007G078100 Sobic007G078100 Sobic007G161400--Sobic007G078100 Sobic007G161400--Sobic002G312900 Sobic003G363800 Sobic003G363800 Sobic007G161400--Sobic003G363800 Sobic004G051700 Sobic004G051700 Sobic007G161400--Sobic004G051700 Sobic001G444400 Sobic001G444400 Sobic003G436800--Sobic001G444400 Sobic010G209900 Sobic010G209900 Sobic003G436800--Sobic010G209900 Sobic002G278300 Sobic002G278300 Sobic003G436800--Sobic002G278300 Sobic004G273400 Sobic004G273400 Sobic003G436800--Sobic004G273400 Sobic001G100700 Sobic001G100700 Sobic003G436800--Sobic001G100700 Sobic009G106800 Sobic009G106800 Sobic003G436800--Sobic009G106800 Sobic009G055100 Sobic009G055100 Sobic003G436800--Sobic009G055100 Sobic005G058800 Sobic005G058800 Sobic003G436800--Sobic005G058800 Sobic001G243500 Sobic001G243500 Sobic003G436800--Sobic001G243500 Sobic006G059700--Sobic003G404600 Sobic004G262200 Sobic004G262200 Sobic006G059700--Sobic004G262200 Sobic006G059700--Sobic003G280400 Sobic006G059700--Sobic010G272300 Sobic010G001000 Sobic010G001000 Sobic006G059700--Sobic010G001000 Sobic006G059700--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic006G059700--Sobic001G147900 Sobic006G125100 Sobic006G125100 Sobic006G059700--Sobic006G125100 Sobic006G059700--Sobic002G312900 Sobic005G043000--Sobic002G312900 Sobic005G043000--Sobic010G272300 Sobic005G043000--Sobic006G059700 Sobic005G043000--Sobic007G161400 Sobic005G043000--Sobic002G196100 Sobic005G043000--Sobic001G147900 Sobic001G082600 Sobic001G082600 Sobic005G043000--Sobic001G082600 Sobic005G043000--Sobic008G128900 Sobic005G043000--Sobic003G366600 Sobic002G196100--Sobic005G043000 Sobic002G196100--Sobic010G272300 Sobic002G196100--Sobic002G233100 Sobic002G196100--Sobic003G366600 Sobic010G110800 Sobic010G110800 Sobic002G196100--Sobic010G110800 Sobic004G176600 Sobic004G176600 Sobic002G196100--Sobic004G176600 Sobic002G310600 Sobic002G310600 Sobic002G196100--Sobic002G310600 Sobic009G072900 Sobic009G072900 Sobic002G196100--Sobic009G072900 Sobic005G084600 Sobic005G084600 Sobic002G196100--Sobic005G084600 Sobic010G072000 Sobic010G072000 Sobic010G071900--Sobic010G072000 Sobic005G213200 Sobic005G213200 Sobic010G071900--Sobic005G213200 Sobic010G185500 Sobic010G185500 Sobic010G071900--Sobic010G185500 Sobic010G071900--Sobic001G100700 Sobic009G120000 Sobic009G120000 Sobic010G071900--Sobic009G120000 Sobic010G071900--Sobic009G106800 Sobic001G319500 Sobic001G319500 Sobic010G071900--Sobic001G319500 Sobic003G206900 Sobic003G206900 Sobic010G071900--Sobic003G206900 Sobic010G071900--Sobic005G084600 Sobic002G312900--Sobic004G176600 Sobic002G312900--Sobic008G128900 Sobic010G195500 Sobic010G195500 Sobic002G312900--Sobic010G195500 Sobic002G312900--Sobic005G043000 Sobic003G416300 Sobic003G416300 Sobic002G312900--Sobic003G416300 Sobic002G312900--Sobic006G059700 Sobic002G312900--Sobic003G366600 Sobic002G312900--Sobic001G147900 Sobic002G312900--Sobic005G084600 Sobic010G272300--Sobic010G110800 Sobic010G272300--Sobic006G059700 Sobic010G272300--Sobic001G147900 Sobic010G272300--Sobic005G043000 Sobic010G272300--Sobic003G280400 Sobic006G256900 Sobic006G256900 Sobic010G272300--Sobic006G256900 Sobic010G272300--Sobic001G082600 Sobic003G011600 Sobic003G011600 Sobic010G272300--Sobic003G011600 Sobic010G272300--Sobic003G404600
Octagon: transcription factors


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