Gene annotation
| Transcriptome id | Sobic.005G101500.2 |
|---|---|
| Synonym | Sb05g008770 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) dirigent, putative, expressed |
| UniProt | A0A1Z5RHN3 |
| Pfam | PF03018 |
| Panther DB | PTHR21495 PTHR21495:SF59 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G65870 : Disease resistance-responsive (dirigent-like protein) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g10870.1 : dirigent, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.005G101500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G255700 | alcohol dehydrogenase GroES-like domain containing protein, expressed | - |
| 2 | Sobic.006G039700 | expressed protein | - |
| 3 | Sobic.001G401300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed | - |
| 4 | Sobic.001G401200 | pathogenesis-related Bet v I family protein, putative, expressed | - |
| 5 | Sobic.009G055100 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.009G040900 | sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed | - |
| 7 | Sobic.008G191600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@vesicle-associated membrane protein, putative, expressed | - |
| 8 | Sobic.006G159400 | - | - |
| 9 | Sobic.005G224900 | glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 10 | Sobic.005G136300 | chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 11 | Sobic.002G000400 | "A single-copy gene, share a similar catalytic mechanism with the licorice and Medicago truncatula FNSIIs (CYP93B subfamily) by converting flavanones to flavone through the formation of 2-hydroxyflavanones, CYP93B subfamily"(PubMedID : 20007684)@enzyme relate to flavone pathway(PubMedID : 27917182)@cytochrome P450, putative, expressed | - |
| 12 | Sobic.010G004200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed | - |
| 13 | Sobic.001G247900 | "Protein chitinase 2, putative, (Os)"(PubMedID : 27208977)@chitinase 2, putative, expressed | - |
| 14 | Sobic.001G400700 | pathogenesis-related Bet v I family protein, putative, expressed | - |
| 15 | Sobic.006G202500 | immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
| 16 | Sobic.002G002900 | - | - |
| 17 | Sobic.010G130700 | leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed | - |
| 18 | Sobic.010G176600 | - | - |
| 19 | Sobic.002G261800 | snRK1-interacting protein 1, putative, expressed | - |
| 20 | Sobic.005G037100 | receptor-like protein kinase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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