Gene annotation
Transcriptome id Sobic.003G008100.1
Synonym Sb03g000870
Functional annotation U-box domain containing protein, expressed
UniProt C5XJN8
Pfam PF00400 PF04564
Panther DB PTHR22844 PTHR22844:SF205
NCBI CDD KOG0279; G protein beta subunit-like protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G06880 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g12930.1 : U-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022828
Brachypodium KQK03419 , PNT70211 , KQK03418
Barley HORVU3Hr1G052520.11 , HORVU3Hr1G052520.10 , HORVU3Hr1G052520.13 , HORVU3Hr1G052520.12 , HORVU3Hr1G052520.15 , HORVU3Hr1G052520.14 , HORVU3Hr1G052520.17 , HORVU3Hr1G052520.16 , HORVU3Hr1G052520.18 , HORVU3Hr1G052520.7 , HORVU3Hr1G052520.1 , HORVU3Hr1G052520.3 , HORVU3Hr1G052520.9 , HORVU3Hr1G052520.8 , HORVU3Hr1G052520.5 , HORVU3Hr1G052520.4 , HORVU3Hr1G052520.2
Wheat TraesCS3D02G162400 , TraesCS3A02G154900 , TraesCS3B02G181200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G277900 ki1 protein, putative, expressed -
2 Sobic.010G266000 uncharacterized protein(PubMedID : 28640841)@expressed protein -
3 Sobic.001G033701 - -
4 Sobic.004G184900 pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.004G122700 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
6 Sobic.010G103300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane attack complex component/perforin/complement C9, putative, expressed -
7 Sobic.008G008701 - -
8 Sobic.004G090900 nuclear ribonuclease Z, putative, expressed K00784: ribonuclease Z
9 Sobic.002G046500 gibberellin 20 oxidase 1-B, putative, expressed -
10 Sobic.008G008601 - -
11 Sobic.001G452300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
12 Sobic.007G027400 MBTB16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
13 Sobic.005G029866 - -
14 Sobic.009G113300 - -
15 Sobic.002G289601 - -
16 Sobic.001G045300 ubiquitin family protein, putative, expressed -
17 Sobic.002G084100 - -
18 Sobic.002G063500 Leucine Rich Repeat family protein, expressed -
19 Sobic.008G069901 - -
20 Sobic.010G081500 - -


Gene co-expression network
sample Sobic003G008100 Sobic003G008100 Sobic002G277900 Sobic002G277900 Sobic003G008100--Sobic002G277900 Sobic010G266000 Sobic010G266000 Sobic003G008100--Sobic010G266000 Sobic001G033701 Sobic001G033701 Sobic003G008100--Sobic001G033701 Sobic004G184900 Sobic004G184900 Sobic003G008100--Sobic004G184900 Sobic004G122700 Sobic004G122700 Sobic003G008100--Sobic004G122700 Sobic010G103300 Sobic010G103300 Sobic003G008100--Sobic010G103300 Sobic008G008701 Sobic008G008701 Sobic003G008100--Sobic008G008701 Sobic004G090900 Sobic004G090900 Sobic003G008100--Sobic004G090900 Sobic002G046500 Sobic002G046500 Sobic003G008100--Sobic002G046500 Sobic002G277900--Sobic003G008100 Sobic005G190700 Sobic005G190700 Sobic002G277900--Sobic005G190700 Sobic005G029866 Sobic005G029866 Sobic002G277900--Sobic005G029866 Sobic001G200400 Sobic001G200400 Sobic002G277900--Sobic001G200400 Sobic008G045100 Sobic008G045100 Sobic002G277900--Sobic008G045100 Sobic009G125700 Sobic009G125700 Sobic002G277900--Sobic009G125700 Sobic003G083100 Sobic003G083100 Sobic002G277900--Sobic003G083100 Sobic002G277900--Sobic010G266000 Sobic002G277900--Sobic004G184900 Sobic010G273200 Sobic010G273200 Sobic010G266000--Sobic010G273200 Sobic001G152240 Sobic001G152240 Sobic010G266000--Sobic001G152240 Sobic002G103400 Sobic002G103400 Sobic010G266000--Sobic002G103400 Sobic010G091750 Sobic010G091750 Sobic010G266000--Sobic010G091750 Sobic010G266000--Sobic010G103300 Sobic003G060900 Sobic003G060900 Sobic010G266000--Sobic003G060900 Sobic005G144101 Sobic005G144101 Sobic010G266000--Sobic005G144101 Sobic007G087500 Sobic007G087500 Sobic010G266000--Sobic007G087500 Sobic008G053700 Sobic008G053700 Sobic010G266000--Sobic008G053700 Sobic001G033701--Sobic004G090900 Sobic001G033701--Sobic002G046500 Sobic001G045300 Sobic001G045300 Sobic001G033701--Sobic001G045300 Sobic002G289601 Sobic002G289601 Sobic001G033701--Sobic002G289601 Sobic005G014600 Sobic005G014600 Sobic001G033701--Sobic005G014600 Sobic002G084100 Sobic002G084100 Sobic001G033701--Sobic002G084100 Sobic007G027400 Sobic007G027400 Sobic001G033701--Sobic007G027400 Sobic001G033701--Sobic008G008701 Sobic009G113300 Sobic009G113300 Sobic001G033701--Sobic009G113300 Sobic008G069901 Sobic008G069901 Sobic004G184900--Sobic008G069901 Sobic003G046000 Sobic003G046000 Sobic004G184900--Sobic003G046000 Sobic004G184900--Sobic009G113300 Sobic010G081500 Sobic010G081500 Sobic004G184900--Sobic010G081500 Sobic004G184900--Sobic002G289601 Sobic006G258200 Sobic006G258200 Sobic004G184900--Sobic006G258200 Sobic001G160300 Sobic001G160300 Sobic004G184900--Sobic001G160300 Sobic006G076700 Sobic006G076700 Sobic004G184900--Sobic006G076700 Sobic004G184900--Sobic005G014600 Sobic004G122700--Sobic008G008701 Sobic004G122700--Sobic004G090900 Sobic001G138500 Sobic001G138500 Sobic004G122700--Sobic001G138500 Sobic008G008601 Sobic008G008601 Sobic004G122700--Sobic008G008601 Sobic004G122700--Sobic001G045300 Sobic005G207550 Sobic005G207550 Sobic004G122700--Sobic005G207550 Sobic004G122700--Sobic002G046500 Sobic004G122700--Sobic001G033701 Sobic004G122700--Sobic007G027400 Sobic010G103300--Sobic008G053700 Sobic006G004700 Sobic006G004700 Sobic010G103300--Sobic006G004700 Sobic010G103300--Sobic003G046000 Sobic010G103300--Sobic008G069901 Sobic010G103300--Sobic004G184900 Sobic001G452300 Sobic001G452300 Sobic010G103300--Sobic001G452300 Sobic002G063500 Sobic002G063500 Sobic010G103300--Sobic002G063500 Sobic010G103300--Sobic007G087500 Sobic010G103300--Sobic009G113300 Sobic008G008701--Sobic004G122700 Sobic008G008701--Sobic004G090900 Sobic008G008701--Sobic001G045300 Sobic008G008701--Sobic001G138500 Sobic008G008701--Sobic002G046500 Sobic008G008701--Sobic007G027400 Sobic008G008701--Sobic005G207550 Sobic008G008701--Sobic001G033701 Sobic008G008701--Sobic008G008601 Sobic004G090900--Sobic002G046500 Sobic004G090900--Sobic001G045300 Sobic004G090900--Sobic007G027400 Sobic004G090900--Sobic008G008701 Sobic004G090900--Sobic002G084100 Sobic004G090900--Sobic005G014600 Sobic004G090900--Sobic004G122700 Sobic004G090900--Sobic001G033701 Sobic003G245101 Sobic003G245101 Sobic004G090900--Sobic003G245101 Sobic002G046500--Sobic004G090900 Sobic002G046500--Sobic001G045300 Sobic002G046500--Sobic007G027400 Sobic002G046500--Sobic002G084100 Sobic002G046500--Sobic003G245101 Sobic004G162800 Sobic004G162800 Sobic002G046500--Sobic004G162800 Sobic001G358101 Sobic001G358101 Sobic002G046500--Sobic001G358101 Sobic002G046500--Sobic002G289601 Sobic002G046500--Sobic005G014600
Octagon: transcription factors


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