Gene annotation
Transcriptome id Sobic.003G197600.2
Synonym ASK2, SKP1B
Functional annotation SKP1-like protein 1B, putative, expressed
UniProt A0A1W0VY63 , A0A125QUG2 , C6JSH6
Pfam PF03931 PF01466
Panther DB PTHR11165
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G75950 : S phase kinase-associated protein 1
RAP-DB (Rice) LOC_Os11g26910.1 : SKP1-like protein 1B, putative, expressed
MaizeGDB (Corn) Zm00025a015850 , Zm00025a015852 , Zm00025a029772 , Zm00025a015913 , Zm00025a028498 , Zm00025a028499 , Zm00025a015847 , Zm00025a015846 , Zm00025a015845 , Zm00025a018627
Brachypodium KQJ99541 , KQJ92734 , KQJ88553
Barley HORVU5Hr1G110790.1 , HORVU5Hr1G110760.1 , HORVU5Hr1G110760.2 , HORVU6Hr1G000640.13 , HORVU5Hr1G110820.3 , HORVU5Hr1G110820.2 , HORVU1Hr1G030620.1 , HORVU7Hr1G099840.1 , HORVU5Hr1G110820.1 , HORVU5Hr1G110810.3 , HORVU6Hr1G000640.14 , HORVU6Hr1G000640.15 , HORVU6Hr1G000640.16 , HORVU6Hr1G000640.17 , HORVU5Hr1G110830.1 , HORVU5Hr1G110830.2 , HORVU5Hr1G110830.3 , HORVU6Hr1G000640.18 , HORVU6Hr1G000640.19 , HORVU0Hr1G007820.1 , HORVU0Hr1G007820.2 , HORVU7Hr1G002220.4 , HORVU7Hr1G002220.3 , HORVU7Hr1G002220.2 , HORVU7Hr1G002220.1 , HORVU5Hr1G110840.1 , HORVU5Hr1G110800.1 , HORVU7Hr1G099950.1 , HORVU6Hr1G000640.20 , HORVU6Hr1G000640.23 , HORVU6Hr1G000640.22 , HORVU6Hr1G000640.24 , HORVU7Hr1G099790.3 , HORVU7Hr1G099790.2 , HORVU7Hr1G099790.1 , HORVU5Hr1G110810.2 , HORVU6Hr1G000660.1 , HORVU6Hr1G000660.2 , HORVU5Hr1G110810.1
Wheat TraesCS4A02G472600 , TraesCS6A02G000300 , TraesCS5D02G105800 , TraesCS7A02G020600 , TraesCS7D02G016900 , TraesCS5D02G337200 , TraesCS6B02G053400 , TraesCS6D02G001600 , TraesCS6B02G004300 , TraesCS5A02G331300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G275000 LRP1, putative, expressed -
2 Sobic.006G200100 expressed protein -
3 Sobic.006G159200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.007G176400 STIGL2 - Stigma-specific Stig1 family protein precursor, putative, expressed -
5 Sobic.004G102500 BES1/BZR1 homolog protein, putative, expressed -
6 Sobic.006G134600 thaumatin, putative, expressed -
7 Sobic.005G089800 OsFBL33 - F-box domain and LRR containing protein, expressed -
8 Sobic.008G074200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@expressed protein -
9 Sobic.001G398150 - -
10 Sobic.010G062700 LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.005G061950 - -
12 Sobic.009G021050 - -
13 Sobic.007G139850 - -
14 Sobic.002G133150 - -
15 Sobic.010G122900 cadmium tolerance factor, putative, expressed -
16 Sobic.004G150901 - -
17 Sobic.004G126601 - -
18 Sobic.008G084000 - -
19 Sobic.006G004800 expressed protein -
20 Sobic.009G116000 PHD finger protein, putative, expressed -


Gene co-expression network
sample Sobic003G197600 Sobic003G197600 Sobic002G275000 Sobic002G275000 Sobic003G197600--Sobic002G275000 Sobic006G200100 Sobic006G200100 Sobic003G197600--Sobic006G200100 Sobic006G159200 Sobic006G159200 Sobic003G197600--Sobic006G159200 Sobic007G176400 Sobic007G176400 Sobic003G197600--Sobic007G176400 Sobic004G102500 Sobic004G102500 Sobic003G197600--Sobic004G102500 Sobic006G134600 Sobic006G134600 Sobic003G197600--Sobic006G134600 Sobic005G089800 Sobic005G089800 Sobic003G197600--Sobic005G089800 Sobic008G074200 Sobic008G074200 Sobic003G197600--Sobic008G074200 Sobic001G398150 Sobic001G398150 Sobic003G197600--Sobic001G398150 Sobic001G494700 Sobic001G494700 Sobic002G275000--Sobic001G494700 Sobic004G029200 Sobic004G029200 Sobic002G275000--Sobic004G029200 Sobic001G129750 Sobic001G129750 Sobic002G275000--Sobic001G129750 Sobic003G020900 Sobic003G020900 Sobic002G275000--Sobic003G020900 Sobic003G279000 Sobic003G279000 Sobic002G275000--Sobic003G279000 Sobic002G331900 Sobic002G331900 Sobic002G275000--Sobic002G331900 Sobic010G081300 Sobic010G081300 Sobic002G275000--Sobic010G081300 Sobic001G185700 Sobic001G185700 Sobic002G275000--Sobic001G185700 Sobic007G034650 Sobic007G034650 Sobic002G275000--Sobic007G034650 Sobic006G200100--Sobic006G134600 Sobic006G200100--Sobic005G089800 Sobic006G200100--Sobic001G398150 Sobic006G200100--Sobic004G102500 Sobic010G115450 Sobic010G115450 Sobic006G200100--Sobic010G115450 Sobic010G062700 Sobic010G062700 Sobic006G200100--Sobic010G062700 Sobic006G200100--Sobic007G176400 Sobic010G169500 Sobic010G169500 Sobic006G200100--Sobic010G169500 Sobic005G162100 Sobic005G162100 Sobic006G200100--Sobic005G162100 Sobic007G082700 Sobic007G082700 Sobic006G159200--Sobic007G082700 Sobic001G405200 Sobic001G405200 Sobic006G159200--Sobic001G405200 Sobic001G405450 Sobic001G405450 Sobic006G159200--Sobic001G405450 Sobic006G029250 Sobic006G029250 Sobic006G159200--Sobic006G029250 Sobic009G034250 Sobic009G034250 Sobic006G159200--Sobic009G034250 Sobic004G198350 Sobic004G198350 Sobic006G159200--Sobic004G198350 Sobic002G157950 Sobic002G157950 Sobic006G159200--Sobic002G157950 Sobic009G013850 Sobic009G013850 Sobic006G159200--Sobic009G013850 Sobic004G311550 Sobic004G311550 Sobic006G159200--Sobic004G311550 Sobic007G176400--Sobic004G102500 Sobic007G176400--Sobic006G134600 Sobic007G176400--Sobic006G200100 Sobic007G176400--Sobic001G398150 Sobic007G176400--Sobic005G089800 Sobic007G176400--Sobic010G062700 Sobic007G176400--Sobic010G115450 Sobic004G121500 Sobic004G121500 Sobic007G176400--Sobic004G121500 Sobic010G142132 Sobic010G142132 Sobic007G176400--Sobic010G142132 Sobic004G102500--Sobic006G200100 Sobic004G102500--Sobic006G134600 Sobic004G135600 Sobic004G135600 Sobic004G102500--Sobic004G135600 Sobic004G102500--Sobic005G089800 Sobic004G102500--Sobic005G162100 Sobic004G102500--Sobic001G398150 Sobic004G102500--Sobic010G169500 Sobic004G102500--Sobic007G176400 Sobic004G102500--Sobic010G062700 Sobic006G134600--Sobic001G398150 Sobic006G134600--Sobic006G200100 Sobic006G134600--Sobic005G089800 Sobic006G134600--Sobic004G102500 Sobic006G134600--Sobic010G062700 Sobic006G134600--Sobic010G115450 Sobic006G134600--Sobic010G142132 Sobic005G067000 Sobic005G067000 Sobic006G134600--Sobic005G067000 Sobic006G134600--Sobic007G176400 Sobic005G089800--Sobic006G134600 Sobic005G089800--Sobic006G200100 Sobic005G089800--Sobic001G398150 Sobic005G089800--Sobic004G102500 Sobic005G089800--Sobic010G115450 Sobic005G089800--Sobic010G062700 Sobic005G089800--Sobic007G176400 Sobic005G089800--Sobic010G142132 Sobic005G089800--Sobic005G067000 Sobic009G021050 Sobic009G021050 Sobic008G074200--Sobic009G021050 Sobic007G139850 Sobic007G139850 Sobic008G074200--Sobic007G139850 Sobic004G150901 Sobic004G150901 Sobic008G074200--Sobic004G150901 Sobic008G084000 Sobic008G084000 Sobic008G074200--Sobic008G084000 Sobic010G138600 Sobic010G138600 Sobic008G074200--Sobic010G138600 Sobic009G253600 Sobic009G253600 Sobic008G074200--Sobic009G253600 SobicK044420 SobicK044420 Sobic008G074200--SobicK044420 Sobic005G152550 Sobic005G152550 Sobic008G074200--Sobic005G152550 Sobic008G181701 Sobic008G181701 Sobic008G074200--Sobic008G181701 Sobic001G398150--Sobic006G134600 Sobic001G398150--Sobic010G062700 Sobic001G398150--Sobic006G200100 Sobic001G398150--Sobic005G089800 Sobic001G398150--Sobic010G142132 Sobic001G398150--Sobic005G067000 Sobic001G398150--Sobic010G115450 Sobic006G176300 Sobic006G176300 Sobic001G398150--Sobic006G176300 Sobic007G221300 Sobic007G221300 Sobic001G398150--Sobic007G221300
Octagon: transcription factors


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