Gene annotation
Transcriptome id Sobic.003G274900.1
Synonym Sb03g032680
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1B6Q5N9
Pfam PF08263 PF13855 PF07714
Panther DB PTHR27008 PTHR27008:SF26
NCBI CDD KOG0192; Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G68400 : leucine-rich repeat transmembrane protein kinase family protein
RAP-DB (Rice) LOC_Os01g51400.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a038942
Brachypodium KQK09438
Barley HORVU3Hr1G067050.1 , HORVU3Hr1G067050.2 , HORVU3Hr1G074930.2 , HORVU3Hr1G074930.1
Wheat TraesCS3A02G250300 , TraesCS3B02G279800 , TraesCS3D02G250700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G014700 expressed protein -
2 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
3 Sobic.004G045500 phytosulfokine receptor precursor, putative, expressed -
4 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
5 Sobic.006G140801 - -
6 Sobic.005G034500 receptor kinase, putative, expressed -
7 Sobic.004G248100 endoglucanase, putative, expressed -
8 Sobic.005G055400 amidase family protein, putative, expressed -
9 Sobic.001G199400 monocopper oxidase, putative, expressed -
10 Sobic.010G065700 expressed protein -
11 Sobic.008G159601 - -
12 Sobic.009G146700 universal stress protein domain containing protein, putative, expressed -
13 Sobic.004G234400 heavy metal-associated domain containing protein, expressed -
14 Sobic.007G180200 NC domain-containing protein, putative, expressed -
15 Sobic.002G039900 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@- -
16 Sobic.007G153100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659906)@expressed protein -
17 Sobic.003G120600 transmembrane protein 136, putative, expressed -
18 Sobic.003G356600 ATROPGEF7/ROPGEF7, putative, expressed -
19 Sobic.001G320500 expressed protein -
20 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -


Gene co-expression network
sample Sobic003G274900 Sobic003G274900 Sobic010G014700 Sobic010G014700 Sobic003G274900--Sobic010G014700 Sobic003G113500 Sobic003G113500 Sobic003G274900--Sobic003G113500 Sobic004G045500 Sobic004G045500 Sobic003G274900--Sobic004G045500 Sobic003G070600 Sobic003G070600 Sobic003G274900--Sobic003G070600 Sobic006G140801 Sobic006G140801 Sobic003G274900--Sobic006G140801 Sobic005G034500 Sobic005G034500 Sobic003G274900--Sobic005G034500 Sobic004G248100 Sobic004G248100 Sobic003G274900--Sobic004G248100 Sobic005G055400 Sobic005G055400 Sobic003G274900--Sobic005G055400 Sobic001G199400 Sobic001G199400 Sobic003G274900--Sobic001G199400 Sobic003G338700 Sobic003G338700 Sobic010G014700--Sobic003G338700 Sobic009G146700 Sobic009G146700 Sobic010G014700--Sobic009G146700 Sobic010G014700--Sobic001G199400 Sobic005G199700 Sobic005G199700 Sobic010G014700--Sobic005G199700 Sobic002G363300 Sobic002G363300 Sobic010G014700--Sobic002G363300 Sobic010G014500 Sobic010G014500 Sobic010G014700--Sobic010G014500 Sobic007G180200 Sobic007G180200 Sobic010G014700--Sobic007G180200 Sobic003G027100 Sobic003G027100 Sobic010G014700--Sobic003G027100 Sobic004G215400 Sobic004G215400 Sobic010G014700--Sobic004G215400 Sobic003G113500--Sobic001G199400 Sobic004G357000 Sobic004G357000 Sobic003G113500--Sobic004G357000 Sobic003G113500--Sobic004G248100 Sobic004G211700 Sobic004G211700 Sobic003G113500--Sobic004G211700 Sobic003G113500--Sobic003G027100 Sobic010G078700 Sobic010G078700 Sobic003G113500--Sobic010G078700 Sobic003G113500--Sobic003G070600 Sobic004G342000 Sobic004G342000 Sobic003G113500--Sobic004G342000 Sobic002G032500 Sobic002G032500 Sobic003G113500--Sobic002G032500 Sobic004G045500--Sobic004G342000 Sobic010G027700 Sobic010G027700 Sobic004G045500--Sobic010G027700 Sobic001G179400 Sobic001G179400 Sobic004G045500--Sobic001G179400 Sobic002G068400 Sobic002G068400 Sobic004G045500--Sobic002G068400 Sobic005G118700 Sobic005G118700 Sobic004G045500--Sobic005G118700 Sobic003G120600 Sobic003G120600 Sobic004G045500--Sobic003G120600 Sobic005G218000 Sobic005G218000 Sobic004G045500--Sobic005G218000 Sobic002G312200 Sobic002G312200 Sobic004G045500--Sobic002G312200 Sobic004G045500--Sobic005G055400 Sobic001G074000 Sobic001G074000 Sobic003G070600--Sobic001G074000 Sobic010G020600 Sobic010G020600 Sobic003G070600--Sobic010G020600 Sobic007G160300 Sobic007G160300 Sobic003G070600--Sobic007G160300 Sobic003G070600--Sobic001G199400 Sobic003G070600--Sobic003G113500 Sobic001G221900 Sobic001G221900 Sobic003G070600--Sobic001G221900 Sobic004G274600 Sobic004G274600 Sobic003G070600--Sobic004G274600 Sobic004G283800 Sobic004G283800 Sobic003G070600--Sobic004G283800 Sobic003G070600--Sobic004G248100 Sobic006G140801--Sobic010G014700 Sobic006G140801--Sobic007G160300 Sobic006G140801--Sobic009G146700 Sobic006G140801--Sobic001G074000 Sobic006G140801--Sobic003G070600 Sobic004G317200 Sobic004G317200 Sobic006G140801--Sobic004G317200 Sobic006G140801--Sobic003G338700 Sobic006G274200 Sobic006G274200 Sobic006G140801--Sobic006G274200 Sobic006G140801--Sobic004G211700 Sobic005G034500--Sobic003G027100 Sobic003G178500 Sobic003G178500 Sobic005G034500--Sobic003G178500 Sobic005G034500--Sobic002G032500 Sobic005G034500--Sobic005G055400 Sobic005G034500--Sobic004G357000 Sobic010G166300 Sobic010G166300 Sobic005G034500--Sobic010G166300 Sobic007G211200 Sobic007G211200 Sobic005G034500--Sobic007G211200 Sobic005G034500--Sobic004G211700 Sobic001G341700 Sobic001G341700 Sobic005G034500--Sobic001G341700 Sobic004G248100--Sobic002G032500 Sobic004G248100--Sobic003G113500 Sobic004G248100--Sobic010G020600 Sobic004G248100--Sobic004G357000 Sobic003G309400 Sobic003G309400 Sobic004G248100--Sobic003G309400 Sobic003G338200 Sobic003G338200 Sobic004G248100--Sobic003G338200 Sobic003G339600 Sobic003G339600 Sobic004G248100--Sobic003G339600 Sobic006G044200 Sobic006G044200 Sobic004G248100--Sobic006G044200 Sobic007G094200 Sobic007G094200 Sobic004G248100--Sobic007G094200 Sobic004G041700 Sobic004G041700 Sobic005G055400--Sobic004G041700 Sobic007G076100 Sobic007G076100 Sobic005G055400--Sobic007G076100 Sobic005G055400--Sobic005G218000 Sobic005G055400--Sobic003G178500 Sobic004G318800 Sobic004G318800 Sobic005G055400--Sobic004G318800 Sobic005G055400--Sobic002G312200 Sobic005G055400--Sobic003G120600 Sobic005G055400--Sobic004G342000 Sobic005G055400--Sobic001G341700 Sobic001G199400--Sobic010G014700 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic001G199400--Sobic003G338700 Sobic007G165800 Sobic007G165800 Sobic001G199400--Sobic007G165800 Sobic001G199400--Sobic010G078700 Sobic001G199400--Sobic003G070600 Sobic001G199400--Sobic007G180200 Sobic001G199400--Sobic001G074000
Octagon: transcription factors


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